Jatropha Genome Database

JcCA0140011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140011.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010849 conserved hypothetical protein                          244   2e-65
27955.m000392 conserved hypothetical protein                           53   1e-07
30174.m008671 conserved hypothetical protein                           50   9e-07

>30190.m010849 conserved hypothetical protein
          Length = 205

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/138 (86%), Positives = 125/138 (90%), Gaps = 1/138 (0%)

Query: 76  QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSS 135
           QYVSVKNPN+A+FSHYDSTLQLLYSGSQVGFMFIPAGKI++GRTQYMAATFAVQSFPLSS
Sbjct: 69  QYVSVKNPNRATFSHYDSTLQLLYSGSQVGFMFIPAGKIESGRTQYMAATFAVQSFPLSS 128

Query: 136 SPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKA 195
           SPDAAVNVGP F G   P G P  + G+RVGPTMEIESRI M GRVRVLHIFTHHVEAKA
Sbjct: 129 SPDAAVNVGPAFTGSGFP-GVPGSSNGFRVGPTMEIESRIQMVGRVRVLHIFTHHVEAKA 187

Query: 196 GCRVAIAVSDGSVLGFHC 213
            CRVAIAVSDGSVLGFHC
Sbjct: 188 ECRVAIAVSDGSVLGFHC 205


>27955.m000392 conserved hypothetical protein
          Length = 217

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 21/136 (15%)

Query: 78  VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
           ++V NPNK    + + +  L Y G  VG + IPAGK+ A  T+ M  T  V +  L S+P
Sbjct: 97  LTVTNPNKVGLKYKNGSALLNYRGELVGEVPIPAGKMGADETRPMNVTVTVMADRLLSNP 156

Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
                             +  V  G      + + + I ++G+V + +IF   V+    C
Sbjct: 157 QL----------------FSDVMSGL-----LNVSTLIKLSGKVAIFNIFKISVDTTTTC 195

Query: 198 RVAIAVSDGSVLGFHC 213
            V++ +++ ++    C
Sbjct: 196 DVSVFIANATIADQKC 211


>30174.m008671 conserved hypothetical protein
          Length = 218

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 29/162 (17%)

Query: 59  SYLLSPFQTTLSTLPSP-------QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPA 111
           + +++  +   +T+P P         +SVKNPN  SF + ++T  L Y G  VG    P 
Sbjct: 73  NVIITHMELINNTIPKPGTNISLVADLSVKNPNIVSFKYDNTTSALYYHGVLVGEARGPP 132

Query: 112 GKIDAGRTQYMAATFAVQSFPLSSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEI 171
           G   A RT  + AT  + +  L S+P    N+    A G+L                  +
Sbjct: 133 GHSKARRTMRLNATIDLVADKLISNP----NLNTDAATGLL-----------------TV 171

Query: 172 ESRIHMAGRVRVLHIFTHHVEAKAGCRVAIAVSDGSVLGFHC 213
           +S   + G+V++L I   HV  K  C + + +S  ++    C
Sbjct: 172 DSYTKLPGKVKIL-IIKKHVTIKMNCSLTVNISSQAIQSQKC 212