Jatropha Genome Database

JcCA0140001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140001.20 - phase: 1 /partial
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002051 chlorophyll A/B binding protein, putative               238   4e-64
30005.m001300 chlorophyll A/B binding protein, putative               234   6e-63
30076.m004578 chlorophyll A/B binding protein, putative               233   1e-62
29597.m000282 chlorophyll A/B binding protein, putative               218   3e-58
30027.m000815 chlorophyll A/B binding protein, putative               169   3e-43
29827.m002667 chlorophyll A/B binding protein, putative               114   1e-26
30005.m001249 chlorophyll A/B binding protein, putative                97   2e-21
30170.m013809 chlorophyll A/B binding protein, putative                97   2e-21
29701.m000601 chlorophyll A/B binding protein, putative                86   4e-18
28802.m000133 chlorophyll A/B binding protein, putative                85   7e-18
30170.m013880 chlorophyll A/B binding protein, putative                77   2e-15
29739.m003729 chlorophyll A/B binding protein, putative                75   9e-15
29929.m004650 chlorophyll A/B binding protein, putative                74   1e-14
30138.m004060 chlorophyll A/B binding protein, putative                69   6e-13
29669.m000843 chlorophyll A/B binding protein, putative                66   3e-12

>29693.m002051 chlorophyll A/B binding protein, putative
          Length = 265

 Score =  238 bits (608), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
           SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL
Sbjct: 150 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 209

Query: 61  KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
           KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265


>30005.m001300 chlorophyll A/B binding protein, putative
          Length = 265

 Score =  234 bits (597), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/116 (99%), Positives = 115/116 (99%)

Query: 1   SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
           SLIHAQSILAIWA QVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL
Sbjct: 150 SLIHAQSILAIWASQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 209

Query: 61  KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
           KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265


>30076.m004578 chlorophyll A/B binding protein, putative
          Length = 267

 Score =  233 bits (595), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/116 (97%), Positives = 115/116 (99%)

Query: 1   SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
           SLIHAQSILAIWA QVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDPEAFAEL
Sbjct: 152 SLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 211

Query: 61  KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
           KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267


>29597.m000282 chlorophyll A/B binding protein, putative
          Length = 265

 Score =  218 bits (556), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 110/116 (94%)

Query: 1   SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
           +LIHAQSILAIWACQVVLMG VEGYRV GGPLGE  DPIYPGG+FDPLGLADDPEAFAEL
Sbjct: 150 NLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAEL 209

Query: 61  KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
           KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265


>30027.m000815 chlorophyll A/B binding protein, putative
          Length = 268

 Score =  169 bits (427), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 97/118 (82%), Gaps = 3/118 (2%)

Query: 1   SLIHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFA 58
           +L+HAQSILA+   QVVLMG VEG+R+ G P +GE  D +YPGG  FDPLGLADDP  FA
Sbjct: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210

Query: 59  ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
           ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT F PG 
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFSPGS 268


>29827.m002667 chlorophyll A/B binding protein, putative
          Length = 292

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 2/91 (2%)

Query: 14  CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 73
            +VVL+G  E YR+  G   ++ D ++PGG FDPLGLA DP+  A LKVKEIKNGRLAMF
Sbjct: 189 AEVVLLGGAEYYRIINGL--DLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMF 246

Query: 74  SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
           +M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 247 AMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 277


>30005.m001249 chlorophyll A/B binding protein, putative
          Length = 273

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 32  LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
           LG   DP YPGG  F+PLG   D ++  ELK+KE+KNGRLAM ++ G+FVQ +VTG GP 
Sbjct: 192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 251

Query: 91  ENLADHLADPVNNN 104
           +NL DHLADPVNNN
Sbjct: 252 QNLLDHLADPVNNN 265


>30170.m013809 chlorophyll A/B binding protein, putative
          Length = 329

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 7/107 (6%)

Query: 5   AQSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 57
           +Q +L I  CQ +LM   E  R  G     PLG     D  YPGG  FDPL L+ D  A 
Sbjct: 215 SQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVAL 274

Query: 58  AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
            ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL +H++DP +NN
Sbjct: 275 EELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNN 321


>29701.m000601 chlorophyll A/B binding protein, putative
          Length = 285

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 10/102 (9%)

Query: 7   SILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKV 62
           SI  +   +V+++G +E  R          DP   +YPGG F DPLGLA+DPE  A L++
Sbjct: 183 SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQL 236

Query: 63  KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
            EIK+ RLAM +  GF VQA VTGKGPL N A HL+DP++  
Sbjct: 237 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 278


>28802.m000133 chlorophyll A/B binding protein, putative
          Length = 244

 Score = 84.7 bits (208), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 40  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 98
           YPGG+FDPLG + DP  F E KVKEIKNGRLA+ +  G  V Q+   G GPLENLA HLA
Sbjct: 167 YPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLA 226

Query: 99  DPVNNN 104
           DP +NN
Sbjct: 227 DPWHNN 232


>30170.m013880 chlorophyll A/B binding protein, putative
          Length = 269

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 34  EVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
           E  +P YPGG   +P GLA D  +  + K+KEIKNGRLAM +M G FVQA VT  GP++N
Sbjct: 188 EGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGPIDN 247

Query: 93  LADHLADPVNNN 104
           L +HL+DP +  
Sbjct: 248 LLEHLSDPWHKT 259


>29739.m003729 chlorophyll A/B binding protein, putative
          Length = 297

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 62/113 (54%), Gaps = 16/113 (14%)

Query: 15  QVVLMGAVEGYRVAG----------GPLGEVTDPI----YPGG-SFDPLGLAD-DPEAFA 58
           Q+VLMG VEG R A             L   T P     YPGG  FDPL      PE   
Sbjct: 184 QLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVM 243

Query: 59  ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 111
            L+ KEIKNGRLAM +  GF  QA+ TG+GP+ENL  H+ADP + N ++  T+
Sbjct: 244 VLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTS 296


>29929.m004650 chlorophyll A/B binding protein, putative
          Length = 270

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 57/102 (55%), Gaps = 16/102 (15%)

Query: 15  QVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGG-SFDPLGLAD-DPEAFA 58
           +++ +G  EG R A    P    TDPI            YPGG  FDPLG     PE   
Sbjct: 157 ELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIK 216

Query: 59  ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 100
           EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct: 217 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258


>30138.m004060 chlorophyll A/B binding protein, putative
          Length = 251

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 40  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 99
           YPGG F+PL  A   EA    K KE+ NGRLAM +  GF +Q  VTGKGP +NL  HL+D
Sbjct: 183 YPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSD 238

Query: 100 PVNN 103
           P +N
Sbjct: 239 PWHN 242


>29669.m000843 chlorophyll A/B binding protein, putative
          Length = 282

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 10/87 (11%)

Query: 11  IWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKN 67
           IW  +V+++G +E  R A        DP   IYPGG FDPLGLA DPE    L++ EIK+
Sbjct: 199 IW-IEVLVIGYIEFQRNAE------LDPEKRIYPGGYFDPLGLASDPEKKENLQLAEIKH 251

Query: 68  GRLAMFSMFGFFVQAIVTGKGPLENLA 94
            RLAM +   F +QA  TGKGP+  +A
Sbjct: 252 SRLAMVAFLIFGIQAAFTGKGPIAFVA 278