Jatropha Genome Database

JcCA0139031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139031.10 - phase: 0 /partial
         (278 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29629.m001434 farnesyl-pyrophosphate synthetase, putative             500   e-142
29358.m000044 farnesyl-pyrophosphate synthetase, putative             411   e-115

>29629.m001434 farnesyl-pyrophosphate synthetase, putative
          Length = 352

 Score =  500 bits (1287), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/276 (85%), Positives = 259/276 (93%)

Query: 1   MSDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKS 60
           M+D KSKFLEVYS LKSQLLNDPAFEFTDDSRQWL+ MLDYNVPRGKLYRGLAVIDCYK+
Sbjct: 1   MTDPKSKFLEVYSLLKSQLLNDPAFEFTDDSRQWLEHMLDYNVPRGKLYRGLAVIDCYKA 60

Query: 61  LKEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIN 120
           LKEG+ELT DE+LLA VLGWC+EWLQACAVVLDDIMDNSHTRRG+PCW+ L KVG IAIN
Sbjct: 61  LKEGEELTGDEILLASVLGWCMEWLQACAVVLDDIMDNSHTRRGRPCWFRLAKVGLIAIN 120

Query: 121 DGIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSL 180
           DGI+L NQ  RIL+MYFREKPYYV LL+LF+EVEFQS  GEMIDLI+THKGE+DLSNYSL
Sbjct: 121 DGILLTNQCHRILRMYFREKPYYVDLLDLFNEVEFQSFSGEMIDLITTHKGEKDLSNYSL 180

Query: 181 SLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGD 240
           SLYHRIVEYKSAYYSIYLPVAC+L++AGENLE+HAE KKILIEITIYF VQDDYQDCFGD
Sbjct: 181 SLYHRIVEYKSAYYSIYLPVACALILAGENLENHAEVKKILIEITIYFSVQDDYQDCFGD 240

Query: 241 PEITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           P+ITGKVGTDIEDCKC+WF+VKALELA+E QKK+LY
Sbjct: 241 PKITGKVGTDIEDCKCSWFIVKALELADENQKKVLY 276


>29358.m000044 farnesyl-pyrophosphate synthetase, putative
          Length = 333

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/276 (69%), Positives = 232/276 (84%)

Query: 1   MSDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKS 60
           M+DLKS FL VYS LK QLL DPAFE+T DSR+W++RMLDYNVP GKL RGL+VID Y+ 
Sbjct: 1   MADLKSTFLNVYSILKKQLLEDPAFEWTPDSREWVNRMLDYNVPGGKLNRGLSVIDSYQL 60

Query: 61  LKEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIN 120
           LKEG+ELT +E+ LA  LGWCIEWLQA  +VLDDIMD SHTRRGQPCW+ +PKVG IA N
Sbjct: 61  LKEGQELTEEEIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN 120

Query: 121 DGIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSL 180
           DG++L N + RILK +FR K YYV LL+LF+EVEFQ+  G+MIDLI+T +GE+DLS Y+L
Sbjct: 121 DGVLLRNHIPRILKNHFRGKAYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTL 180

Query: 181 SLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGD 240
           SL+ RIV+YK+AYYS YLPVAC+LLMAGENL+ H + K IL+++ IYFQVQDDY DCFGD
Sbjct: 181 SLHRRIVQYKTAYYSFYLPVACALLMAGENLDDHIDVKNILVDMGIYFQVQDDYLDCFGD 240

Query: 241 PEITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           P+  GK+GTDIED KC+W VVKALEL N+EQKK+L+
Sbjct: 241 PKTIGKIGTDIEDFKCSWLVVKALELCNDEQKKVLH 276