Jatropha Genome Database

JcCA0138821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138821.10 + phase: 0 
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001386 DNA binding protein, putative                            60   3e-10
29711.m000322 DNA binding protein, putative                            58   1e-09

>29830.m001386 DNA binding protein, putative
          Length = 317

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 3/47 (6%)

Query: 27 PTRSQPSQRPESEVKD---ARKVLKADREKLRRDRLNEQFIELGNAL 70
          P+ S+   R E+E KD   A+KV KADREKLRRDRLNEQF+ELGN L
Sbjct: 22 PSSSESRNRLEAEAKDPIAAKKVQKADREKLRRDRLNEQFLELGNTL 68


>29711.m000322 DNA binding protein, putative
          Length = 316

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 3/41 (7%)

Query: 33 SQRPESEVKDA---RKVLKADREKLRRDRLNEQFIELGNAL 70
          SQ  ESEVKD+   RK  KADREKLRRDRLNE FIELG+AL
Sbjct: 21 SQGLESEVKDSVAVRKSEKADREKLRRDRLNEHFIELGDAL 61