Jatropha Genome Database

JcCA0138571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.20 - phase: 0 
         (376 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29811.m000546 conserved hypothetical protein                           70   2e-12

>29811.m000546 conserved hypothetical protein
          Length = 170

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 77/138 (55%), Gaps = 3/138 (2%)

Query: 157 DFSARNTWKNLTGEVNYNPRYSKASKLKKPSLRYIHKFLSNSIFGRSESDGVLSLNELYF 216
           +F++ N W ++T      P+ +K++ +  P+LR+I+++ + +I  R +S G++   E++F
Sbjct: 2   EFNSNNAWLSVTMGT---PKVAKSTSIIDPNLRHIYRWKAYTICARGDSFGIVQKTEVFF 58

Query: 217 LWAIENGVLLNVGYWLCQKFGKVAGADKGAIMVGCFVTRIARYLQVWNPARPIYDSIGGG 276
           +  ++  + + +G +L      +       I++   VT+IA YL+V++P    +  +   
Sbjct: 59  MHCMQKNIKVALGRFLASHLQSITTQPNENILIRSLVTKIATYLKVFDPKDITFKLLPQS 118

Query: 277 RSTRLDLDVMIHMKLIEK 294
            +  L+L  ++ M+LI+K
Sbjct: 119 DAEVLNLHTLVKMELIKK 136