Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002305 conserved hypothetical protein                          116   3e-27

>30078.m002305 conserved hypothetical protein
          Length = 106

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 78/145 (53%), Gaps = 39/145 (26%)

Query: 1   MGFGFAIGTFGVLILGHATYSTIQSXRLWRRNFQDLQXMXVLFFFYLFICFPCLCLTVRI 60
           MG GF IG FG LIL HA YSTIQ   L +   ++                P + + + +
Sbjct: 1   MGLGFIIGAFGTLILAHAAYSTIQYRGLLKIMEEEF-------------AGPPMNVVIEL 47

Query: 61  YFCVDGCLGLCKISPFXXXXXXXXXXXXXXXFCFWAALTVPGKFRSIHPYSDENRIVSLP 120
                  LGL                      C WAALT PGKF SIHP+S+ENRIVSLP
Sbjct: 48  ------LLGLV--------------------LCMWAALTAPGKFLSIHPHSEENRIVSLP 81

Query: 121 ANMDFMVFNHRGKVFPSEMDMKLKH 145
            NMDFM+FNHRGKV PSE++MKLKH
Sbjct: 82  DNMDFMIFNHRGKVLPSEVEMKLKH 106