Jatropha Genome Database

JcCA0138521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138521.10 - phase: 0 /partial
         (243 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000361 DNA polymerase delta small subunit, putative            428   e-120

>29613.m000361 DNA polymerase delta small subunit, putative
          Length = 425

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/243 (84%), Positives = 225/243 (92%)

Query: 1   MDMDGEKNLQRKQAIYSSLDETFKIQKETYRGQQYSQIYFARLHMMRTLLYSLVPHWKNH 60
           M++D EK+L RKQ  Y+SLDET++IQ ETYRGQQYSQIYFARLHM+RTLLYSLVP WK+H
Sbjct: 1   MEIDNEKSLHRKQCTYASLDETYEIQNETYRGQQYSQIYFARLHMIRTLLYSLVPLWKSH 60

Query: 61  LTVCTILGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDYLVLE 120
           L VCT+LGL EGKECIIVGTLYKHMKLKPCILDEYSKERSA+PLVKPHNFMH DD+LVLE
Sbjct: 61  LPVCTVLGLVEGKECIIVGTLYKHMKLKPCILDEYSKERSAIPLVKPHNFMHLDDHLVLE 120

Query: 121 DESGRVKLGGDMLSPSAYVTGVVVALHGKETSAGDFLVLDVLEAGLAPQIELPLQPREDK 180
           DESGRVKLGGDML+PSAYVTG+VVALHGKET AGDF+VLDVLEAGL PQIELPLQ REDK
Sbjct: 121 DESGRVKLGGDMLTPSAYVTGLVVALHGKETGAGDFMVLDVLEAGLPPQIELPLQSREDK 180

Query: 181 YVVFVSGLSLGSIRSNPLQFQLLVDHITGHLGDEQEQGIVAEIVHVVVAGNSVEIPVGLL 240
           YVVFVSGL++GS   NPLQFQLLVDHITGHLG+E+EQ I AEIVHVV+AGNSVEIP GLL
Sbjct: 181 YVVFVSGLNVGSSTFNPLQFQLLVDHITGHLGNEKEQAIAAEIVHVVIAGNSVEIPHGLL 240

Query: 241 NGQ 243
           NGQ
Sbjct: 241 NGQ 243