Jatropha Genome Database

JcCA0135211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0135211.10 + phase: 2 /partial
         (61 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29785.m000940 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase,...   111   6e-26

>29785.m000940 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase,
           putative
          Length = 388

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 56/61 (91%)

Query: 1   GSTIVGIGSPDPPQFIYDDEDYKDVFISEANFLTREPNQWYKEPASTAACDATSEFSLST 60
           GSTIVGIGSPDPPQFIYDD+DYKDVF+SEANFLTRE N+WYKEPASTAAC   S+FS ST
Sbjct: 328 GSTIVGIGSPDPPQFIYDDDDYKDVFVSEANFLTREANEWYKEPASTAACGTESDFSQST 387

Query: 61  E 61
           E
Sbjct: 388 E 388