Jatropha Genome Database

JcCA0134961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134961.10 - phase: 0 /partial
         (185 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29633.m000903 ATP synthase mitochondrial F1 complex assembly fac...   314   1e-86

>29633.m000903 ATP synthase mitochondrial F1 complex assembly factor
           2, mitochondrial precursor, putative
          Length = 334

 Score =  314 bits (805), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/185 (83%), Positives = 161/185 (87%)

Query: 1   QLDGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPEDNDLTRGVYER 60
           Q DGIRPF MPLMKLACTALERVPLTR KIIE+LMKKFNQDLVFCRAPEDNDLT GVYER
Sbjct: 150 QTDGIRPFTMPLMKLACTALERVPLTRLKIIENLMKKFNQDLVFCRAPEDNDLTSGVYER 209

Query: 61  QVEKIDPLLDWVKSEFGFKPVVHSSFFGGKQEEGLVKAIEDLLQKTDNFEXXXXXXXXXX 120
           QVEKIDPLLDWVKSEFGFKPVV+SSFFGGKQEEGLVKAIEDLL+KTDN E          
Sbjct: 210 QVEKIDPLLDWVKSEFGFKPVVYSSFFGGKQEEGLVKAIEDLLKKTDNCELAAIDAIAAS 269

Query: 121 XXXXXXXXGIFRGKLDIEEAIQLIRLEEDLQVDKWGLVEGGHDVDIADLRVQVSSAAVFL 180
                   GI RGKLDIEEAIQLIRLEEDLQVD+WGLVEGGHD+DIADLRVQ+SSAAVFL
Sbjct: 270 AHSLVIAIGIVRGKLDIEEAIQLIRLEEDLQVDRWGLVEGGHDIDIADLRVQISSAAVFL 329

Query: 181 GLSRT 185
           GLSRT
Sbjct: 330 GLSRT 334