Jatropha Genome Database

JcCA0134311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134311.20 - phase: 0 
         (59 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004706 conserved hypothetical protein                           45   5e-06

>29929.m004706 conserved hypothetical protein
          Length = 58

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1  MDSGPSWADQWDNDTPDTPPQXXXXXXXXXXXXXXXXXXXXXXLLILKWMKDLRKKPEK 59
          MDSG SWADQWD DTPD PPQ                      +L  +WMKDLRKK +K
Sbjct: 1  MDSGLSWADQWDYDTPDPPPQ-PESEKDKNKDKNGNKNKLRKKILSFQWMKDLRKKSQK 58