Jatropha Genome Database

JcCA0134311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134311.10 + phase: 2 /partial
         (82 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004707 conserved hypothetical protein                          120   1e-28
29692.m000519 conserved hypothetical protein                           49   3e-07

>29929.m004707 conserved hypothetical protein
          Length = 483

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQ-VNCQEEE 59
           AEGCQQKEHS+Q CR CTLCIARC QCG CINDSEYEETFCLELLCSDC+KQ + CQE++
Sbjct: 401 AEGCQQKEHSSQACRGCTLCIARCSQCGCCINDSEYEETFCLELLCSDCYKQLLKCQEKQ 460

Query: 60  DGKISPPKAPAVCESSCSFRLYG 82
             KI+PPK+ A   SSCS RL+G
Sbjct: 461 VNKITPPKSLARHVSSCSGRLHG 483


>29692.m000519 conserved hypothetical protein
          Length = 332

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 5   QQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCW 50
           Q+++     CR C  CI+RC +CG CI+  E E+  C ++LCSDCW
Sbjct: 246 QKRDRLVADCRGCNFCISRCEECGGCIDAEEQEDAACADILCSDCW 291