Jatropha Genome Database

JcCA0133161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133161.10 + phase: 0 /partial
         (299 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001682 conserved hypothetical protein                          318   2e-87
29895.m000316 conserved hypothetical protein                          182   2e-46

>29680.m001682 conserved hypothetical protein
          Length = 328

 Score =  318 bits (816), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/264 (64%), Positives = 186/264 (70%), Gaps = 2/264 (0%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAASKVPEE TIKAMEDFYREIYA+NGITDIKFPEHYPVSR              
Sbjct: 42  GRLWIHAASKVPEEATIKAMEDFYREIYAVNGITDIKFPEHYPVSRLLGCVEVVGCVRCE 101

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
             ASWEA P GARLEGQTDFCWLCE PQKLLVPFEMRGYQ VYNLEKKI+EAAVRGL PV
Sbjct: 102 ELASWEATPEGARLEGQTDFCWLCEQPQKLLVPFEMRGYQGVYNLEKKIFEAAVRGLTPV 161

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSVAM-LPEKASEVEKSSTLTXXXXXXXXXXTQFSKKDQ 205
           KGPMPV FPLPNP DPFSL+PGS++M L +KAS+VEKS++LT          TQF+KK Q
Sbjct: 162 KGPMPVTFPLPNPCDPFSLKPGSISMQLLDKASQVEKSASLTTAIAGARAAATQFNKKGQ 221

Query: 206 YFLXXXXXXXXXXXXXXDQAKDKLLEQHNVPQNNFYEGSNDESSVSNEMEQSNGIKDVES 265
                            D  + K LE+H + Q+  YE  NDESSV  E EQ+N IK  ES
Sbjct: 222 NLPTNNAQNSNSNAARSDPVETKPLEEHKLQQDKSYEDFNDESSVPKETEQTNCIKYEES 281

Query: 266 SSHSRTRADAKQL-RAPAKVLSYL 288
           SSHSRTR D KQ   APAK  + L
Sbjct: 282 SSHSRTRLDMKQFPGAPAKFCATL 305


>29895.m000316 conserved hypothetical protein
          Length = 213

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAA KVP+  TIKAMEDFYREIYA++GI D+KFPE+YPVSR              
Sbjct: 42  GRLWIHAAGKVPDPTTIKAMEDFYREIYAVDGIVDLKFPEYYPVSRLVGCVEVVGCIKRR 101

Query: 87  XXASWEAIP--VGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLI 144
                  +   +  +LEG+TDFCWLCE P KL+VP EMRG+QR++NL+ ++YEAAVR L 
Sbjct: 102 AAPVLHNLDPLLQVKLEGKTDFCWLCEEPNKLIVPLEMRGHQRIFNLDNQLYEAAVRVLC 161

Query: 145 PVKGPMPVKFPLPNPRDPFSLRPGSVA 171
           PV   +P+KFPLP+P+D FSL+PGS+ 
Sbjct: 162 PVDASLPIKFPLPDPQDLFSLKPGSLG 188