Jatropha Genome Database

JcCA0132221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0132221.10 + phase: 0 /partial
         (420 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28076.m000417 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha...   803   0.0  

>28076.m000417 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase,
           putative
          Length = 716

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/446 (88%), Positives = 408/446 (91%), Gaps = 26/446 (5%)

Query: 1   MATGTVPASFTGLKARESSLGFGKSMDFVRVCDLKRIKSG-RKKISMIRNS-NPGPEMVE 58
           MATG VP SFTGLK RES+LGFGKSMDFVR+CDLKRIKSG RK+ISMIRNS NPGPEMVE
Sbjct: 1   MATGAVPTSFTGLKTRESNLGFGKSMDFVRICDLKRIKSGGRKRISMIRNSSNPGPEMVE 60

Query: 59  LQPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKDVAG 118
           LQPAS GSPLLVPRQKYCES HKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTK+VA 
Sbjct: 61  LQPASPGSPLLVPRQKYCESTHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKNVAA 120

Query: 119 TVEQVMRIADQGANLVRITVQGKREADAAFEIKNTLVQKNYNIPLVADIHFAPTVALRVA 178
           TVE+VMRIAD+GA+LVRITVQGKREADA F+IKN+LVQKNYNIPLVADIHFAP+VALR+A
Sbjct: 121 TVEEVMRIADKGADLVRITVQGKREADACFDIKNSLVQKNYNIPLVADIHFAPSVALRIA 180

Query: 179 ECFDKIRVNPGNFADRRAQFEKLEYTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTN 238
           ECFDKIRVNPGNFADRRAQFEKLEYT++DYQ ELEHIEQVFTPLVEKCKKYGRAMRIGTN
Sbjct: 181 ECFDKIRVNPGNFADRRAQFEKLEYTEDDYQIELEHIEQVFTPLVEKCKKYGRAMRIGTN 240

Query: 239 HGSLSDRIMSYYGDSPRG------------------------NASNPVIMVQAYRLLVAE 274
           HGSLSDRIMSYYGDSPRG                         ASNPVIMVQAYRLLVAE
Sbjct: 241 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAE 300

Query: 275 MYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR 334
           MYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR
Sbjct: 301 MYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR 360

Query: 335 LANLGMRASAIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSV 394
           LANLGMRASA+QQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRG LHRDGSVLMSV
Sbjct: 361 LANLGMRASAVQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGALHRDGSVLMSV 420

Query: 395 SLDQLKAPELLYKSLAAKLVVGMPLR 420
           SLDQLK PELLYKSLAAKLVVGMP +
Sbjct: 421 SLDQLKVPELLYKSLAAKLVVGMPFK 446