Jatropha Genome Database

JcCA0131921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131921.10 + phase: 0 /pseudo
         (339 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002380 conserved hypothetical protein                          405   e-113
29976.m000498 hypothetical protein                                     78   5e-15

>29729.m002380 conserved hypothetical protein
          Length = 593

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/323 (66%), Positives = 245/323 (75%), Gaps = 6/323 (1%)

Query: 1   MKSEGDLGLPGSDSKEIGEKRSSGELGEKQESAPKRIKMRDLHSVLRSEVHSEISTHHSK 60
           MK++GDLGLPGSDSK IGEKR S ELGEKQESA KRIKMRDL+ VLRS+   E S HH K
Sbjct: 1   MKNQGDLGLPGSDSKVIGEKRISCELGEKQESALKRIKMRDLNFVLRSQ---ETSAHHLK 57

Query: 61  EEEANDQLQFGEEMSQITSVPITLDPDASELGRTSRTVLSVEVNPATRPLDLNSEAYVAD 120
             EA  Q Q   E+SQ+T+VP+TLD  AS++  + +T + VEVNP  R LDLNSEA +A+
Sbjct: 58  IREAGSQNQLSAEISQVTNVPVTLDLSASQVEISGKTAVPVEVNPGHRSLDLNSEACIAN 117

Query: 121 SSAGHGSPEGTEACNKVSLLKQHNREHDYKRVTSRGIGLDLNAEDVTSSMNQELLSTSKN 180
            S   GSP+  E  NKV LLK+H+REHD + V+S GIGLDLN +DV+SSMNQ+   +SKN
Sbjct: 118 VSPSDGSPKRNENYNKVLLLKKHDREHDERCVSSGGIGLDLNEDDVSSSMNQD---SSKN 174

Query: 181 HDQMKSRGDASECGSTTGPAEGKDPLKVWKEMKQNXXXXXXXXXXXXXXXXXXXXHGGIP 240
            DQ+K R D SECGSTTGP EGKDPLKVW EMKQN                    HGGIP
Sbjct: 175 QDQLKLRRDLSECGSTTGPVEGKDPLKVWTEMKQNGFLSSSHGGISFQSGLVSSSHGGIP 234

Query: 241 MPKQRGRKSKNDVLKKKMELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRNRKQVHSII 300
           MPKQRGRK+KNDVLKK+MELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRN+KQVHSII
Sbjct: 235 MPKQRGRKNKNDVLKKRMELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRNKKQVHSII 294

Query: 301 EALVRSEKQENNCTEAKQDSHLK 323
           EALVRSEK EN   E KQ++ +K
Sbjct: 295 EALVRSEKVENGHVETKQETCVK 317


>29976.m000498 hypothetical protein
          Length = 264

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 53/67 (79%)

Query: 239 IPMPKQRGRKSKNDVLKKKMELAKKEQVDRFTKIAAPSGLLNGLNPGIINHVRNRKQVHS 298
           +P+PK+R ++   D+ K  M++AK ++++RF K+AAPSGLLN LNPGIIN +R+ +QV S
Sbjct: 117 VPVPKKRTKRCIIDLQKGNMKVAKLQKLNRFIKLAAPSGLLNELNPGIINRMRSSEQVFS 176

Query: 299 IIEALVR 305
           +I +LVR
Sbjct: 177 VINSLVR 183



 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 184 MKSRGDASECGSTTGPAEGKDPLKVWKEMKQNXXXXXXXXXXXXXXXXXXXXHGGIPMPK 243
           M  R ++   G+    AE KDP+KVW+EMKQN                       +P P+
Sbjct: 21  MDHRIESFNIGTCNHHAEKKDPMKVWQEMKQNGFLTPSVTQ--------------MPTPQ 66

Query: 244 QRGRKSKNDVLKKKMELAKKEQVDRFTKIAAPS 276
           ++ ++ +N     K ELAK +QVD F KI  P+
Sbjct: 67  KQSKRRRNKTPNSKRELAKMQQVDNFIKIVEPA 99