Jatropha Genome Database

JcCA0130881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0130881.10 - phase: 0 
         (335 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014310 Rop guanine nucleotide exchange factor, putative        394   e-110
29683.m000479 Rop guanine nucleotide exchange factor, putative        349   1e-96
28934.m000056 Rop guanine nucleotide exchange factor, putative        284   3e-77
30146.m003571 conserved hypothetical protein                          242   1e-64
30174.m008604 Rop guanine nucleotide exchange factor, putative        237   7e-63
30143.m001222 Rop guanine nucleotide exchange factor, putative        233   7e-62
29827.m002639 Rop guanine nucleotide exchange factor, putative        213   1e-55
29912.m005503 conserved hypothetical protein                          199   1e-51

>30170.m014310 Rop guanine nucleotide exchange factor, putative
          Length = 523

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/310 (66%), Positives = 230/310 (74%), Gaps = 13/310 (4%)

Query: 1   METVSSEEELDQLSERCEFDXXXXXXXXXXXXXXXXXXCPHYDHQGASTSFTSSPLTGPQ 60
           M T+SSEEELDQL ER EFD                  C HY+HQ ASTS        P 
Sbjct: 1   MGTISSEEELDQLRERFEFDSYTSSADVSESKSSSSFSCHHYEHQRASTS-------SPP 53

Query: 61  FHDGFNSPPPLPIMLPVVSGRHVTIPTKGAVKPDTGLSEVEMMKERFAKLLLGEDMSGRG 120
           F D F SPP LPIMLPVV G+HV +      K +  LS+VEMMKERFAKLLLGEDMSG G
Sbjct: 54  FLDRFFSPPSLPIMLPVVPGKHVMM------KMEENLSDVEMMKERFAKLLLGEDMSGGG 107

Query: 121 NGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSMWHREMEWLLCVSNSIVELVPSMQ 180
            GVCTALAISNAITNLSASVFGE  KLEPLA  KKSMWHREM+ LLCVS+SIVELVPSMQ
Sbjct: 108 KGVCTALAISNAITNLSASVFGELRKLEPLAPQKKSMWHREMDLLLCVSDSIVELVPSMQ 167

Query: 181 DFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSILDGFCNSDFSYVDSKVMVAVGDET 240
           + P G TFEVMVPRPR DL +NLPALKKL+ MLLSILDGFC+++F YVD  V+VA G+ET
Sbjct: 168 NLPGGGTFEVMVPRPRLDLFMNLPALKKLETMLLSILDGFCDAEFYYVDRGVIVAGGNET 227

Query: 241 KXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTRKRLQQCRECTNQILKAAMAINNS 300
           +            I++EEK WLPFPKVP+NGLSED RKRLQQC+ECTNQILK AMAIN S
Sbjct: 228 ETFSLSSSSARPSISREEKWWLPFPKVPQNGLSEDARKRLQQCKECTNQILKVAMAINGS 287

Query: 301 VLSEMEIPNA 310
           VL+EMEIP+A
Sbjct: 288 VLTEMEIPSA 297


>29683.m000479 Rop guanine nucleotide exchange factor, putative
          Length = 580

 Score =  349 bits (896), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 222/340 (65%), Gaps = 21/340 (6%)

Query: 1   METVSSEEELDQLSERCEFDXXXXXXXXXXXXXXXXXXCPH-YDHQGASTSFTSSPLTGP 59
           M +VSS++  D+ SERC                     C   +D +GASTS TSSP    
Sbjct: 9   MGSVSSDDGGDEQSERCGSYSLSADVSESESSTSSSFWCRRGFDGEGASTSITSSP---- 64

Query: 60  QFHDGFNSPPPLPIMLPV---VSGRHVTIPTKGAVKP---DTGLSEVEMMKERFAKLLLG 113
                     PLP                     +KP   DT LSEVEMMKERFAKLLLG
Sbjct: 65  ----------PLPSSAKFCFQTPLLLPKDLLLWDIKPEKRDTDLSEVEMMKERFAKLLLG 114

Query: 114 EDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSMWHREMEWLLCVSNSIV 173
           EDMSG G GVCTALAISNAITNLSA+VFGE W+LEPLA  KKSMW REMEWLLCVS+SIV
Sbjct: 115 EDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKSMWRREMEWLLCVSDSIV 174

Query: 174 ELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSILDGFCNSDFSYVDSKVM 233
           ELVPS+Q FP G T+E+M  +PRSDL+VNLPALKKLDAML+S+LDGFC ++F YVD  ++
Sbjct: 175 ELVPSVQQFPGGGTYEIMAAQPRSDLYVNLPALKKLDAMLISMLDGFCETEFWYVDRGII 234

Query: 234 VAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTRKRLQQCRECTNQILKA 293
           +A G +              I QEEK WLP PK+P NGLSED RKRLQQCR+CTNQILKA
Sbjct: 235 LADGADNDVYPSGFSTGRPSIRQEEKWWLPCPKLPSNGLSEDARKRLQQCRDCTNQILKA 294

Query: 294 AMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           AMAIN+SVL+EMEIP AYLE+LPK      G   Y   T+
Sbjct: 295 AMAINSSVLAEMEIPTAYLETLPKCGKACLGDIIYRYITA 334


>28934.m000056 Rop guanine nucleotide exchange factor, putative
          Length = 673

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/254 (56%), Positives = 177/254 (69%), Gaps = 6/254 (2%)

Query: 80  GRHVTIPTKGAVKPDTGLSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSAS 139
           G+ + +  +   K  + +SE+EMMKERF+KLLLGEDMSG GNGVCTALAISNAITNL A+
Sbjct: 194 GKKLHLVDRKLEKQASSISEIEMMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLCAT 253

Query: 140 VFGEQWKLEPLAQPKKSMWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDL 199
           +FG+ W+LEPL   KK+MW REMEW LCVS+ IVEL+PS Q FP G+  EVM  RPRSDL
Sbjct: 254 LFGQLWRLEPLPPEKKAMWRREMEWFLCVSDHIVELIPSWQTFPDGSKLEVMTCRPRSDL 313

Query: 200 HVNLPALKKLDAMLLSILDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEK 259
           +VNLPAL+KLD MLL ILD F N++F YVD  ++ +  D +               QEEK
Sbjct: 314 YVNLPALRKLDNMLLEILDSFDNTEFWYVDQGILASEADGSSSFRRALQ------RQEEK 367

Query: 260 CWLPFPKVPRNGLSEDTRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVW 319
            WLP P+VP  GL E++RK LQ  R+CTNQ+LKAAMAIN+  L++ME+P  YLE LPK  
Sbjct: 368 WWLPVPRVPPCGLHENSRKELQHKRDCTNQMLKAAMAINSITLADMEVPETYLEGLPKNG 427

Query: 320 NTPCGMKFYFCTTS 333
               G   Y   +S
Sbjct: 428 KASLGDLIYRYISS 441


>30146.m003571 conserved hypothetical protein
          Length = 554

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 157/239 (65%), Gaps = 12/239 (5%)

Query: 94  DTGLSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQP 153
           D   +++E MKERFAKLLLGEDMSG G GV +ALA+SNA TNL+ASVFGEQ +LEP+   
Sbjct: 100 DKQHTDMEQMKERFAKLLLGEDMSGGGKGVSSALALSNATTNLAASVFGEQQRLEPMPAE 159

Query: 154 KKSMWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAML 213
           +K+ W +E++WLL VS+ IVELVPS Q    G   E+MV R R+DLH+N+PAL+KLDAML
Sbjct: 160 RKARWRKEIDWLLSVSDYIVELVPSQQKNKDGTNMEIMVTRQRTDLHMNIPALRKLDAML 219

Query: 214 LSILDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLS 273
           +  LD F + +  Y  SK      D  K              +++K WLP  KVP NGLS
Sbjct: 220 IDCLDNFKDQNEFYYISK---DAPDSEKGSAK---------RKDDKWWLPTAKVPPNGLS 267

Query: 274 EDTRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTT 332
           E +RK LQ  ++C NQ+LKAAMAIN  VLSEMEIP  Y+ESLPK      G   Y   T
Sbjct: 268 EASRKFLQYQKDCVNQVLKAAMAINAQVLSEMEIPENYIESLPKNGRASLGDSIYRSIT 326


>30174.m008604 Rop guanine nucleotide exchange factor, putative
          Length = 471

 Score =  237 bits (604), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 160/238 (67%), Gaps = 8/238 (3%)

Query: 98  SEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSM 157
           SE+EMMKERF+KLLLGEDMSG G GVCTA+ ISNAITNL A+VFG+  +LEPL   KK+M
Sbjct: 101 SELEMMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQTLRLEPLQPEKKAM 160

Query: 158 WHREMEWLLCVSNSIVELVPSM-QDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSI 216
           W REM+ LL V + I+E  P+  Q+   G   EVM  RPRSD+++NLPAL+KLDA+L+ I
Sbjct: 161 WKREMDCLLSVCDYILEFFPAKSQNLKDGTALEVMESRPRSDIYINLPALRKLDALLIEI 220

Query: 217 LDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDT 276
           LD F +++F Y +   M +    +               +EEK W+P P VP  G+SE +
Sbjct: 221 LDSFQDNEFWYAEQGSMSSNSTRSGSFRRVIVQ-----RKEEKWWVPVPCVPPGGISEKS 275

Query: 277 RKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCG--MKFYFCTT 332
           RK L+  R+C NQI KAAMAIN+S+L+EM+IP+ Y+ SLPK      G  +  Y CTT
Sbjct: 276 RKHLRHKRDCANQIHKAAMAINSSILAEMDIPDTYMASLPKSGKASLGDIIYRYMCTT 333


>30143.m001222 Rop guanine nucleotide exchange factor, putative
          Length = 590

 Score =  233 bits (595), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 148/239 (61%), Gaps = 31/239 (12%)

Query: 95  TGLSEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPK 154
           T +SE++MMKERFAKLLLGEDMSG G GVCTALAISNAITNL  +VFG+ W+LEPL   K
Sbjct: 111 TKISEIDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCVTVFGQLWRLEPLPSEK 170

Query: 155 KSMWHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLL 214
           KSMW REMEWLLCV + IVEL+PS Q FP G+  E                         
Sbjct: 171 KSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLE------------------------- 205

Query: 215 SILDGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSE 274
            ILD F +++F YVD  ++    D +               QEEK WLP P++P  GLS+
Sbjct: 206 EILDSFADTEFWYVDQGIVAPDADGSTSFRKAIQ------RQEEKWWLPVPRLPAGGLSD 259

Query: 275 DTRKRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
            +RK+L   RECTNQILKAAMAIN+  L+EM++P +YLE+LPK      G   Y   TS
Sbjct: 260 KSRKQLNHTRECTNQILKAAMAINSIALAEMDVPYSYLETLPKNGRACLGDLIYRYITS 318


>29827.m002639 Rop guanine nucleotide exchange factor, putative
          Length = 526

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/236 (45%), Positives = 150/236 (63%), Gaps = 13/236 (5%)

Query: 98  SEVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSM 157
           S+VE MKE+FAKLLLGED++G   G+ TALA+SNAI NL+ASVFGE WKLEPL +  K  
Sbjct: 91  SDVETMKEKFAKLLLGEDITGGCKGLTTALALSNAIANLAASVFGELWKLEPLPEENKKK 150

Query: 158 WHREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSIL 217
           W +E++WLL  +N +VELVP+ Q+  +G T E+M P+ R+D+HVNLPAL+KLD+ML+  L
Sbjct: 151 WRKELDWLLSPTNYMVELVPTKQNGANGRTLEIMTPKARADIHVNLPALQKLDSMLIETL 210

Query: 218 DGFCNSDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTR 277
           D   N++F Y +      VG   +              Q ++ WLP P+VP  GLS+  R
Sbjct: 211 DSMVNNEFWYSE------VGSRAE-------GRSKSTKQSKRWWLPLPQVPTTGLSDSER 257

Query: 278 KRLQQCRECTNQILKAAMAINNSVLSEMEIPNAYLESLPKVWNTPCGMKFYFCTTS 333
           K+L    +   Q+ KAA +IN ++L EM +P    ++LPK   T  G + Y   T+
Sbjct: 258 KKLLHKSKVVYQVFKAAKSINENILLEMPVPTIIRDALPKSGKTNLGEELYKILTT 313


>29912.m005503 conserved hypothetical protein
          Length = 296

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 156/270 (57%), Gaps = 37/270 (13%)

Query: 39  CPHYDHQGASTSFTSSPLTGPQFHDGFNSPPPLPIMLPVVSGRHVTIPTKGAVKPDTGLS 98
            P    +   + +  SPL  P+      SP P                       D   S
Sbjct: 59  LPKVGERLVDSQYIGSPLNRPRPDAAAKSPSPR----------------------DKAPS 96

Query: 99  EVEMMKERFAKLLLGEDMSGRGNGVCTALAISNAITNLSASVFGEQWKLEPLAQPKKSMW 158
           +++MMKE+FAKLLLGEDMSG G GV +ALA+SNAITNL+ASVFGEQ +LEP++   K  W
Sbjct: 97  DIDMMKEKFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQKRLEPMSPETKIRW 156

Query: 159 HREMEWLLCVSNSIVELVPSMQDFPSGATFEVMVPRPRSDLHVNLPALKKLDAMLLSILD 218
            +E++WLL V++ IVE VPS Q   +G   E+M  R RSDL +N+PAL+KLD +L+  LD
Sbjct: 157 RKEIDWLLSVTDHIVEFVPSQQS-NNGINMEIMTTRQRSDLLMNIPALRKLDTILIDQLD 215

Query: 219 GFCN-SDFSYVDSKVMVAVGDETKXXXXXXXXXXXXINQEEKCWLPFPKVPRNGLSEDTR 277
            F N ++F YV         DE++               ++K W+P  KVP  GLSE TR
Sbjct: 216 QFGNQNEFWYVSKD-----SDESEQETPP--------RNDDKWWIPTVKVPPEGLSEVTR 262

Query: 278 KRLQQCRECTNQILKAAMAINNSVLSEMEI 307
           + +Q  ++  NQ+LKAAMAIN  VLSEMEI
Sbjct: 263 RWIQFQKDSVNQVLKAAMAINAQVLSEMEI 292