Jatropha Genome Database

JcCA0129501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0129501.10 - phase: 2 /pseudo/partial
         (128 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014098 protein binding protein, putative                        63   4e-11

>30147.m014098 protein binding protein, putative
          Length = 219

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 87  DMDIPIQPFMIDRILAFARQMAGIKLYLGRKVLHMRVDIDVP 128
           +M++P+Q +M+DRIL FARQMA  K Y  RKVLHM+V+IDVP
Sbjct: 92  EMNVPVQSYMLDRILGFARQMATNKRYKNRKVLHMKVEIDVP 133