Jatropha Genome Database

JcCA0128181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128181.10 - phase: 0 /partial
         (269 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29992.m001415 conserved hypothetical protein                          370   e-103
29624.m000319 conserved hypothetical protein                          150   5e-37

>29992.m001415 conserved hypothetical protein
          Length = 364

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/212 (83%), Positives = 194/212 (91%)

Query: 31  HRHSRSSIPVDFSAKIQSAIQSLTSITKIPSTILSAQDPASSLLHDSNVSTAISALLREP 90
           H  S+SS+  D+S KIQSAIQSL+ +T IP ++ S+QDPA SLLHD +VS+ IS LLR P
Sbjct: 26  HNPSQSSLTEDYSYKIQSAIQSLSVVTTIPPSLFSSQDPAFSLLHDPHVSSQISTLLRHP 85

Query: 91  DSGAGDNNLCRWFYDTFQSTSPQLQLVVLRFVPIIAGLYLSRVPLRKPLAGFEAVLLALY 150
           DSGAGDNNLCRWFYDTFQSTS QLQLVVLRF+PIIAGLYLSR+PLRKPLAGFEA+LLALY
Sbjct: 86  DSGAGDNNLCRWFYDTFQSTSSQLQLVVLRFLPIIAGLYLSRIPLRKPLAGFEAILLALY 145

Query: 151 AHETTSRNGQAIAVNIPDLSNSSVYHETKETSKNNATDLNLAVISPSLEPHGTVRSTRRA 210
           AHETTSRNGQAI VNIPDLSNSSVYHETKE SKNNATDLNLAVISPSLEPHGTVRSTRRA
Sbjct: 146 AHETTSRNGQAITVNIPDLSNSSVYHETKEISKNNATDLNLAVISPSLEPHGTVRSTRRA 205

Query: 211 RIVGVALELYFSKLSLMPIGSKIDFCEFCELW 242
           RIV VALELYFSK+SLMP+GSKIDFCEFC++W
Sbjct: 206 RIVSVALELYFSKISLMPLGSKIDFCEFCQIW 237


>29624.m000319 conserved hypothetical protein
          Length = 393

 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 118/194 (60%), Gaps = 11/194 (5%)

Query: 69  PASSLLHDSNVSTAISALLREPDSGAGDNNLCRWFYDTFQSTSPQLQLVVLRFVPIIAGL 128
           PA SLL   +  + +S  L  P SG+G + LC+W Y+T+ S    L+ VVL F+P++ GL
Sbjct: 41  PAISLLSSIDAYSLLSLALSNPLSGSGSDPLCQWLYETYLSQDTHLRFVVLSFIPLLLGL 100

Query: 129 YLSRV-------PLRKPLAGFEAVLLALYAHETTSRNGQAIAVNIPDLSNSSVYHETKET 181
           YLSR+            LAGFEAVLLA+Y+ E  SR G+ + V IPDLS  S+YH  +  
Sbjct: 101 YLSRIHSSDSASSSIPSLAGFEAVLLAIYSSEAKSRGGKPVLVQIPDLSQPSLYHTPR-- 158

Query: 182 SKNNATDLN-LAVISPSLEPHGTVRSTRRARIVGVALELYFSKLSLMPIGSKIDFCEFCE 240
           +K+N++  + + V+SP LEP   V+ST+R  IVG+ L+ YF ++S MP  SK++ C+F  
Sbjct: 159 NKHNSSGFSAVGVLSPPLEPQIAVKSTKRPIIVGIVLDCYFKQISQMPSWSKVELCKFAT 218

Query: 241 LWGRSKMVKCTRKV 254
            W     V C  K+
Sbjct: 219 SWAGQDCV-CKDKL 231