Jatropha Genome Database

JcCA0127871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127871.10 + phase: 0 /partial
         (336 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004687 conserved hypothetical protein                          548   e-156
30027.m000848 conserved hypothetical protein                          131   5e-31

>29848.m004687 conserved hypothetical protein
          Length = 544

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 255/324 (78%), Positives = 283/324 (87%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KNYPRIKTIVNKVGTITNEFRVPKFE+LAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH
Sbjct: 193 KNYPRIKTIVNKVGTITNEFRVPKFEVLAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 252

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           EH+RLVSQF+PG+TICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYL++NAKLNKVDD
Sbjct: 253 EHIRLVSQFQPGDTICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLKINAKLNKVDD 312

Query: 121 RIFPYSMDARKFISQLMAAPNHENDLESEASALKACENHDLQGTEETKSAVDVKEAPDTV 180
            IF Y+MDAR FIS LMA P++ENDLES +  LKAC+NH +Q  EET+ AV VKE PD V
Sbjct: 313 LIFAYNMDARTFISHLMAVPSYENDLESNSPTLKACQNHRIQAYEETQVAVVVKEVPDKV 372

Query: 181 PSDHEGTQDPCRKADTSVTAVKRPSHCFHEENENTHGGAISFTSRRKGSVNKRMRASELP 240
            SDHE  QD CRK D  V AVKRPS C  E N N HG AIS TS+RKGS+NKR+RASELP
Sbjct: 373 SSDHEFAQDQCRKGDAFVAAVKRPSTCCQEGNGNPHGAAISSTSKRKGSINKRLRASELP 432

Query: 241 NTKPWEHVDHVVMNLPASALQFLDAFRGVIKKKDWMGQLPWIHCYCFIRANQTEETIISE 300
           NTKPWEHVDHV+MNLPASALQFLD+F  VI++KDW G LP IHCYCF+RA +T+E+I+ E
Sbjct: 433 NTKPWEHVDHVIMNLPASALQFLDSFSSVIQRKDWKGALPCIHCYCFMRATETKESIVLE 492

Query: 301 AESALGACIQDPVFHRVREVAPNK 324
           AES +GA IQ P+FHRVR+VAPNK
Sbjct: 493 AESTIGAPIQGPIFHRVRDVAPNK 516


>30027.m000848 conserved hypothetical protein
          Length = 641

 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 91/139 (65%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KN P+I+T+VNK+  I N++R  + E+LAG + +VT V + G  F +D   VYWNSRL  
Sbjct: 398 KNKPKIQTVVNKIDAIQNDYRTMQLEVLAGNHSLVTMVVENGLRFHVDLAKVYWNSRLAT 457

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           E  RL+  F   + +CD+F+G+GP A+ AA     VYANDLNP +  YL  N+ LNK++ 
Sbjct: 458 ERQRLLDGFTRNDVVCDVFSGVGPIALSAATIVKRVYANDLNPCAVDYLERNSVLNKLER 517

Query: 121 RIFPYSMDARKFISQLMAA 139
           ++  ++MD R+FI  + ++
Sbjct: 518 KVKVFNMDGRRFIDAMFSS 536



 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 248 VDHVVMNLPASALQFLDAFRGVIKK--KDWMGQLPWIHCYCFIRANQTEETIISEAESAL 305
           +  VVMNLP  A ++LDAFRG+ K   K     LP IH Y F +A+  E         AL
Sbjct: 542 ITQVVMNLPNDAAEYLDAFRGLFKDNPKKREVALPMIHVYGFSKAHDPEFEFHERIRIAL 601

Query: 306 GACIQDPVFHRVREVAPNK 324
                     RVR VAP K
Sbjct: 602 AEAAVHVEMRRVRLVAPGK 620