Jatropha Genome Database

JcCA0122941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122941.10 - phase: 0 
         (251 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30026.m001452 wd40 protein, putative                                  410   e-115

>30026.m001452 wd40 protein, putative
          Length = 1458

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/242 (80%), Positives = 211/242 (87%)

Query: 6   QVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIV 65
            VKIIDI QHCL+KTLR GHTSICSSVQFIPWRPW VITGGLDSKLVMWDFS+GRP KIV
Sbjct: 122 NVKIIDIRQHCLFKTLRAGHTSICSSVQFIPWRPWGVITGGLDSKLVMWDFSKGRPTKIV 181

Query: 66  DFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAI 125
           DFGLP+MK SNT QC NPAFVHAIAVPDADMLD SG IC+  RGDG+++VI+IESELAA+
Sbjct: 182 DFGLPEMKDSNTTQCVNPAFVHAIAVPDADMLDKSGKICVVARGDGIVDVINIESELAAV 241

Query: 126 RSKSTSKARKGSQSISKEYIATAGTDGSRLHLDYSLGGHVAAVSCVAFSLFRERGKFIIS 185
           R+K T+KARKGSQS SK+   TAGT  S LH DYSLGGHVAA SCVAFSLF ERGKFIIS
Sbjct: 242 RTKITTKARKGSQSTSKDSNTTAGTQSSMLHFDYSLGGHVAAASCVAFSLFGERGKFIIS 301

Query: 186 GGNDKSVKVWDCFRYLGTGQSGCNNDILRLNIDLSKKVNWLCTTPTESENLVVCDTTKVV 245
           GGNDKSVKVWDC RY   G S  NNDIL LNI++SKKVNWLCTTP+ESENLVVCDTTKVV
Sbjct: 302 GGNDKSVKVWDCSRYPDVGPSNSNNDILHLNINMSKKVNWLCTTPSESENLVVCDTTKVV 361

Query: 246 KV 247
           K+
Sbjct: 362 KI 363