Jatropha Genome Database

JcCA0122251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122251.10 - phase: 0 /partial
         (179 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form...   229   4e-61
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form...   159   9e-40
29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form...   144   3e-35
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form...   131   2e-31
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form...   113   4e-26
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form...   102   7e-23

>29863.m001055 Cellulose synthase A catalytic subunit 6
           [UDP-forming], putative
          Length = 1095

 Score =  229 bits (585), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 112/179 (62%), Positives = 123/179 (68%), Gaps = 5/179 (2%)

Query: 1   MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
           M T GRL+AGSHNRNEFVLINADE  R+ SV+ELSGQ+CQICGDEIEITVDGEPFVACNE
Sbjct: 1   METKGRLIAGSHNRNEFVLINADEIARVTSVKELSGQICQICGDEIEITVDGEPFVACNE 60

Query: 61  CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
           CAFPVCRPCYEYERREGN+ACPQCKT YKRIKGSPRV                    FD 
Sbjct: 61  CAFPVCRPCYEYERREGNRACPQCKTIYKRIKGSPRVEGDEEEEDTDDLENE-----FDI 115

Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
              + +AEA+ SA LN   AS  N +G              +IPLLTY EED  ISSD+
Sbjct: 116 SASQNIAEAIFSAHLNISTASQVNVSGFAAPPELDSVPIVSEIPLLTYHEEDVGISSDK 174


>29482.m000171 Cellulose synthase A catalytic subunit 3
          [UDP-forming], putative
          Length = 977

 Score =  159 bits (401), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 69/97 (71%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M  G  LVAGSHNRNE V+I+  E    K ++ L GQVC+ICGDEI +TVDG+ FVACNE
Sbjct: 1  MEAGAGLVAGSHNRNELVVIHGHEEH--KPLKNLDGQVCEICGDEIGLTVDGDLFVACNE 58

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          C FP CRPCYEYERREG Q CPQCKTRYKR+KGSPRV
Sbjct: 59 CGFPACRPCYEYERREGTQVCPQCKTRYKRLKGSPRV 95


>29848.m004649 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1083

 Score =  144 bits (362), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/97 (62%), Positives = 71/97 (73%)

Query: 1  MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
          M     +VAGSH RNE V I  D     K ++ L+GQ CQICGD +  T  G+ FVACNE
Sbjct: 1  MEATAGMVAGSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGHTASGDTFVACNE 60

Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
          CAFPVCRPCYEYER++G Q+CPQCKTRY+R KGSPRV
Sbjct: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKGSPRV 97


>29606.m000101 Cellulose synthase A catalytic subunit 6
           [UDP-forming], putative
          Length = 1085

 Score =  131 bits (330), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 29  KSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K V+ +  QVCQIC D +  T+DG+PFVACN CAFPVCRPCYEYER++GNQ+CPQCKTRY
Sbjct: 10  KPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69

Query: 89  KRIKGSPRVXXXXXXXXXXXXXXXX-XYGNFDGMGPEQVAEAMLSARLNTGRASYSNAAG 147
           KR KGSP +                  Y        +++AE MLS ++N GR    +  G
Sbjct: 70  KRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYGRG--EDDVG 127

Query: 148 IPTXXXXXXXXXXXKIPLLTYGEE-DAEISS 177
            P             IPLLT G E   E+S+
Sbjct: 128 AP---KYDKEVSHNHIPLLTNGHEVSGELSA 155


>29761.m000416 Cellulose synthase A catalytic subunit 6
           [UDP-forming], putative
          Length = 899

 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 72/115 (62%), Gaps = 1/115 (0%)

Query: 29  KSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
           K+ ++ + Q+CQIC D +  TV+GEPFVAC+ CAFPVCRPCYEYER++GNQ+CPQCKT+Y
Sbjct: 13  KNAKQNAIQICQICSDNVGTTVNGEPFVACHVCAFPVCRPCYEYERKDGNQSCPQCKTKY 72

Query: 89  KRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDGMGPE-QVAEAMLSARLNTGRASY 142
           KR KGSP +                   +  G+  E Q  E ML    ++GR  Y
Sbjct: 73  KRHKGSPPIRGEDVEDTDYSDVEDKPNHHASGIQDEKQKIEHMLGWEASSGRKDY 127


>29637.m000754 Cellulose synthase A catalytic subunit 6
          [UDP-forming], putative
          Length = 1044

 Score =  102 bits (255), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 35 SGQV-CQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG 93
          SG+V C++CGD+I +  DG  FVAC+ C FPVC+PCYEYER EGNQ CPQC TRYKR +G
Sbjct: 25 SGKVSCRVCGDDIGVKEDGTLFVACHVCRFPVCKPCYEYERSEGNQCCPQCNTRYKRHRG 84

Query: 94 SPRV 97
            RV
Sbjct: 85 CARV 88