Jatropha Genome Database

JcCA0122211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122211.10 - phase: 0 
         (318 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29344.m000105 glycerol-3-phosphate dehydrogenase, putative            577   e-165
30131.m007256 glycerol-3-phosphate dehydrogenase, putative            529   e-151

>29344.m000105 glycerol-3-phosphate dehydrogenase, putative
          Length = 466

 Score =  577 bits (1486), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/316 (88%), Positives = 287/316 (90%), Gaps = 4/316 (1%)

Query: 1   MVGSIEAMNVHQNGWSIQHGNC----LEEKLDEFRCLLGKADGDPLRIVGVGAGAWGSVF 56
           MVGSIEAMNV QNGWSIQ+GN     LEEKLDE R LLGKADGDPLRI GVGAGAWGSVF
Sbjct: 1   MVGSIEAMNVLQNGWSIQNGNGNGSGLEEKLDELRHLLGKADGDPLRIAGVGAGAWGSVF 60

Query: 57  AALLQDSYGQFREKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 116
           AALLQDSY QFR+KVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE
Sbjct: 61  AALLQDSYSQFRDKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 120

Query: 117 ARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTETCEVFE 176
           ARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTET EVFE
Sbjct: 121 ARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTETLEVFE 180

Query: 177 EIGHYWKERITVPIIISLAKGIEAALEPVPHIITPTQMINRATGINMENILYLGGPNIAS 236
           EI  YWKERITVPIIISLAKG+EAALEPVPHIITPTQMINRATG++MENILYLGGPNIAS
Sbjct: 181 EISQYWKERITVPIIISLAKGVEAALEPVPHIITPTQMINRATGVSMENILYLGGPNIAS 240

Query: 237 EIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGKFF 296
           EIYNKEYANARICGA+KWRKPLAKFLRQPHFIVWDNSDL+THEVMGGLKNVYAIGAG   
Sbjct: 241 EIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVA 300

Query: 297 YFLAHIDYCSMAYFQH 312
                       YF H
Sbjct: 301 ALTNESATSKSVYFAH 316


>30131.m007256 glycerol-3-phosphate dehydrogenase, putative
          Length = 467

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/310 (82%), Positives = 272/310 (87%), Gaps = 4/310 (1%)

Query: 6   EAMNVHQNGWSIQHGN---CLEEKLDEFRCLLGKADGDPLRIVGVGAGAWGSVFAALLQD 62
           E+ NVH NG SI + N    LEEKLDE R L+GK++GDPLRIVGVGAGAWGSVF ALLQD
Sbjct: 8   ESHNVHSNG-SIHNQNSNGALEEKLDELRRLMGKSEGDPLRIVGVGAGAWGSVFTALLQD 66

Query: 63  SYGQFREKVQIRIWRRPGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 122
           SYG  R+KV IR+WRRPG++VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR
Sbjct: 67  SYGHLRDKVLIRLWRRPGKSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 126

Query: 123 TLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGVPSTETCEVFEEIGHYW 182
           TL+ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV+NG+PSTET EVF++I  YW
Sbjct: 127 TLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETSEVFQQISRYW 186

Query: 183 KERITVPIIISLAKGIEAALEPVPHIITPTQMINRATGINMENILYLGGPNIASEIYNKE 242
           KERITVP+IISLAKGIEA LEP P IITPTQMINRATG+ MENILYLGGPNIASEIYNKE
Sbjct: 187 KERITVPVIISLAKGIEAELEPEPRIITPTQMINRATGVPMENILYLGGPNIASEIYNKE 246

Query: 243 YANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGKFFYFLAHI 302
           YANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAG         
Sbjct: 247 YANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNES 306

Query: 303 DYCSMAYFQH 312
                 YF H
Sbjct: 307 ATSKSVYFAH 316