Jatropha Genome Database

JcCA0122171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122171.10 - phase: 0 /partial
         (107 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27553.m000321 Cofactor required for Sp1 transcriptional activati...   180   1e-46

>27553.m000321 Cofactor required for Sp1 transcriptional activation
           subunit, putative
          Length = 168

 Score =  180 bits (456), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 91/107 (85%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATA         RLYKDY++NPKSA      I+GTY CFGANYTTEYVLPSLEEQGVRQ
Sbjct: 1   MATAAYPPPPPYYRLYKDYIENPKSAPEPPPPIDGTYTCFGANYTTEYVLPSLEEQGVRQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LYPKGPNVDFKKELRSLNRELQLHILEL+DVLVERPSQYARRVEDIS
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDIS 107