Jatropha Genome Database

JcCA0122071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122071.10 + phase: 0 
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29977.m000249 DNA binding protein, putative                           114   1e-26

>29977.m000249 DNA binding protein, putative
          Length = 234

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 84/137 (61%), Gaps = 21/137 (15%)

Query: 1   MSNAIASGQDPDPVSFRTDPHGSGHPDLDTITDPLLQNGSYIDPSNNLPTSGQTTIKPNK 60
           MSN+  +GQ  +P+  R DPH S  PDL    DPLL+NGS+ID          TTIKPN 
Sbjct: 1   MSNSTHTGQATNPIC-RADPHSSDQPDL--AEDPLLRNGSFIDA---------TTIKPNI 48

Query: 61  DNXXXXXXXXXXXNGVEAE--------TPVKSRRKVPVTMAPG-SAESASWLPPGWLVED 111
           DN              EA         TP+KSRRKVPVTMAP  SA+SA+WLPPGWLVED
Sbjct: 49  DNNVSNNNNNNNYQQQEANVGVEQSEATPLKSRRKVPVTMAPAPSADSANWLPPGWLVED 108

Query: 112 RVRTSGATAGTVDKVHF 128
           RVR SGATAGTVDK + 
Sbjct: 109 RVRASGATAGTVDKYYI 125