Jatropha Genome Database

JcCA0122021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.20 + phase: 0 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30148.m001413 brg-1 associated factor, putative                        68   1e-12
29801.m003069 brg-1 associated factor, putative                        50   2e-07
29780.m001322 brg-1 associated factor, putative                        50   2e-07
29724.m000827 brg-1 associated factor, putative                        45   7e-06

>30148.m001413 brg-1 associated factor, putative
          Length = 134

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 39/48 (81%), Gaps = 1/48 (2%)

Query: 47 EKPLQPAGILKVTPVSPALRDFLG-VPESSRTDAVKKIWIHIKQNNLQ 93
          +KP++  GILK  PVSPAL +FLG VPE+SRTD VKKIW HIK +NLQ
Sbjct: 46 DKPVRATGILKAAPVSPALSEFLGGVPEASRTDVVKKIWDHIKLHNLQ 93


>29801.m003069 brg-1 associated factor, putative
          Length = 141

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 51  QPAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           +P GI+K   VSP + + +G  E  RT A+K+IW HIK+NNLQ
Sbjct: 60  RPRGIMKPRRVSPEMAELVGASEIPRTQALKRIWAHIKENNLQ 102


>29780.m001322 brg-1 associated factor, putative
          Length = 614

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 32/41 (78%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L++F+G  +S+RT+ VKK+W++I++NNLQ
Sbjct: 265 GGFTKLCSLSPQLQEFIGESKSARTEVVKKLWVYIRENNLQ 305



 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L++F G  E +RT+ VKK+WI+I++NNLQ
Sbjct: 414 GGFTKLCSLSPQLQEFTGESELARTEVVKKLWIYIRENNLQ 454


>29724.m000827 brg-1 associated factor, putative
          Length = 397

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 52  PAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           P G+ KV  VSP L+  +G P   RT+ VK++W +I++NNLQ
Sbjct: 210 PGGLNKVCGVSPELQAIVGEPALPRTEIVKQLWAYIRKNNLQ 251