Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.10 - phase: 0 
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30148.m001412 RNA polymerase sigma factor rpoD1, putative             128   7e-31

>30148.m001412 RNA polymerase sigma factor rpoD1, putative
          Length = 569

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 72/85 (84%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60
          MSCLLPQFKCQPDTFSIHFR +Y   SN  QS KSREP+ +RAQCILSTTSPSTSTAVLD
Sbjct: 2  MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 61 LEKLRLPSFEAHPDSLVANSPWTYV 85
          LEKLRLPSFEA  DS+  NSPWTY 
Sbjct: 62 LEKLRLPSFEAPSDSIAPNSPWTYA 86