Jatropha Genome Database

JcCA0120941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120941.10 - phase: 0 
         (257 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27847.m000124 conserved hypothetical protein                          404   e-113

>27847.m000124 conserved hypothetical protein
          Length = 261

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/262 (76%), Positives = 222/262 (84%), Gaps = 6/262 (2%)

Query: 1   MMALKAINTSFSPTKHTLFRTRRPINQKNSILYLCX-----XXXXXXXXXXXXXXXGDTR 55
           M+ALKAI+TSF+PTKH LF TRRP NQKN+I  LC                     GDTR
Sbjct: 1   MIALKAIHTSFTPTKHALFHTRRPTNQKNTIWCLCKPNNNNSDSNSNSDSEASPPEGDTR 60

Query: 56  KQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEAGTRIME 115
           KQELLARIAMLQ +KVRLTDY+DERS+YL+QF EEA+AEFDKIGEDALKGLDEAG RIME
Sbjct: 61  KQELLARIAMLQTEKVRLTDYIDERSSYLSQFTEEASAEFDKIGEDALKGLDEAGARIME 120

Query: 116 NIESQMQAFEESAELNKQEIEKNENKIADFEGQIVKDRNEGMFFKNLGQKPPVDKAKAKV 175
           NIESQM AFEESAELN+++IE+NENK+ADFEGQIVKDRNEGMFFKNLGQKPP+DKA AK 
Sbjct: 121 NIESQMLAFEESAELNRKDIEQNENKLADFEGQIVKDRNEGMFFKNLGQKPPIDKANAKA 180

Query: 176 EAERIKELIKTKAGSKARKNIYLALIGVLVIVIADSFISSSPDWRKVAVLGAILVGLITQ 235
           EAE+IK+L K KAGSK RKNIYLALI V+VI IADSFI SSPDWRKVAVLGA+LVGLITQ
Sbjct: 181 EAEKIKDLTKAKAGSKTRKNIYLALIAVIVISIADSFI-SSPDWRKVAVLGAVLVGLITQ 239

Query: 236 LSYEQRLSSEIESMEKTDKEKK 257
            SYEQ+LSSE+ES+E TDKEKK
Sbjct: 240 FSYEQKLSSELESIENTDKEKK 261