Jatropha Genome Database

JcCA0117501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117501.10 - phase: 0 
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001173 GTP-dependent nucleic acid-binding protein engD, p...   178   4e-46
30169.m006362 GTP-binding protein, putative                            71   1e-13

>30075.m001173 GTP-dependent nucleic acid-binding protein engD,
          putative
          Length = 394

 Score =  178 bits (452), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/86 (97%), Positives = 86/86 (100%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPKA+KSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE
Sbjct: 1  MPPKAAKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVNIPDERF+WLCQLYKPKSEV
Sbjct: 61 PNEARVNIPDERFDWLCQLYKPKSEV 86


>30169.m006362 GTP-binding protein, putative
          Length = 417

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 20  RFSSHLKI------GIVGLPNVGKSTLFNTLTKL-SIPAENFPFCTIEPNEARVNIPDER 72
           RFSS  KI      GIVGLPNVGKSTLFN + +     A NFPFCTIEPN   V +PD R
Sbjct: 39  RFSSSFKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGTVAVPDPR 98

Query: 73  FEWLCQLYKPKSEV 86
              L  L K +  V
Sbjct: 99  LHVLSGLSKSQRAV 112