Jatropha Genome Database

JcCA0117111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117111.10 - phase: 0 /pseudo
         (114 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001426 AMP dependent ligase, putative                          113   2e-26
29830.m001429 AMP dependent ligase, putative                          110   2e-25
29830.m001428 AMP dependent ligase, putative                          107   8e-25
30170.m014355 AMP dependent ligase, putative                           96   4e-21
29830.m001420 AMP dependent ligase, putative                           94   2e-20
30206.m000779 AMP dependent ligase, putative                           78   1e-15
30074.m001335 AMP dependent ligase, putative                           74   1e-14
29769.m000448 AMP dependent ligase, putative                           74   1e-14
29889.m003267 AMP dependent ligase, putative                           63   3e-11
29889.m003266 AMP dependent ligase, putative                           61   9e-11

>29830.m001426 AMP dependent ligase, putative
          Length = 73

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 59/72 (81%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEGL+ C  NYVPLSPISFLERAAK+YGDR SV+YGS++Y WSETY RC+ LAS LTQLG
Sbjct: 1  MEGLVQCPTNYVPLSPISFLERAAKVYGDRTSVVYGSVQYCWSETYERCVRLASALTQLG 60

Query: 61 ISNGDVVSSFHC 72
           S+GDV+    C
Sbjct: 61 ASHGDVLFRLLC 72


>29830.m001429 AMP dependent ligase, putative
          Length = 70

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEGL+ C  NYVPLSPI FLERAAK+YGDR SV+YG ++Y WSETY RC+ LAS LTQLG
Sbjct: 1  MEGLVQCPANYVPLSPIRFLERAAKVYGDRTSVVYGFVQYRWSETYERCIRLASALTQLG 60

Query: 61 ISNGDV 66
          +S GDV
Sbjct: 61 VSQGDV 66


>29830.m001428 AMP dependent ligase, putative
          Length = 544

 Score =  107 bits (268), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEGL+ CS NYVPLSP SFLERAAK+Y DR SV+YG ++YSWS TY+RC+ LAS L QLG
Sbjct: 1  MEGLVCCSTNYVPLSPTSFLERAAKVYRDRTSVVYGDVKYSWSGTYDRCVKLASALAQLG 60

Query: 61 ISNGDVVSSF 70
          IS+GDVV++ 
Sbjct: 61 ISHGDVVATL 70


>30170.m014355 AMP dependent ligase, putative
          Length = 551

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          MEG+I CS NYVPLSPISFLER+A  Y D  S++YG ++Y+W ET+ RC+ LAS L  LG
Sbjct: 1  MEGMIKCSANYVPLSPISFLERSAIAYRDSISIVYGDVKYTWRETHQRCIKLASALVHLG 60

Query: 61 ISNGDVVSSF 70
          I+ GDVV++ 
Sbjct: 61 INRGDVVAAL 70


>29830.m001420 AMP dependent ligase, putative
          Length = 75

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYG-SLEYSWSETYNRCLGLASVLTQ- 58
          MEGL+HCS NYVPL+PISFL+RAA +Y D+ S++YG S+ +SW ETY RC+ +AS L Q 
Sbjct: 1  MEGLLHCSANYVPLTPISFLQRAATVYRDKTSIVYGASVRFSWKETYERCVKVASALVQY 60

Query: 59 LGISNGDV 66
          LG+S+GD+
Sbjct: 61 LGLSSGDI 68


>30206.m000779 AMP dependent ligase, putative
          Length = 562

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          ME L     N  PL+P+SF+ERAA +Y D  S+IY +  Y+WS+TY+RC+ LAS L+ LG
Sbjct: 1  MEDLKPGPANTSPLTPLSFIERAATVYDDCPSIIYDNTTYTWSQTYHRCIKLASSLSSLG 60

Query: 61 ISNGDVVS 68
          IS G VVS
Sbjct: 61 ISRGHVVS 68


>30074.m001335 AMP dependent ligase, putative
          Length = 556

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L     N  PL+P+SFLERA+ +YGD  S++Y +  Y+WS+T+ RCL LAS L+  G
Sbjct: 1  MDHLKPKPANSFPLTPLSFLERASTVYGDCPSIVYNTATYTWSQTHRRCLQLASSLSSGG 60

Query: 61 ISNGDVVS 68
           + GDVVS
Sbjct: 61 FTRGDVVS 68


>29769.m000448 AMP dependent ligase, putative
          Length = 286

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          M+ L  C  NYVPL+P++F +RAA +Y +R SVIY  + ++W +T +RC  LAS L  L 
Sbjct: 1  MDRLPKCEANYVPLTPLTFWKRAAAVYANRTSVIYERIRFTWGQTSDRCCRLASSLRSLN 60

Query: 61 ISNGDVVS 68
          I   DVVS
Sbjct: 61 IMKNDVVS 68


>29889.m003267 AMP dependent ligase, putative
          Length = 564

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query: 1  MEGLIHCSVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLG 60
          ++ L     NY  L+P+ FLERAA ++  R +V++GS  YSW +TY+RC  LAS L    
Sbjct: 5  IDDLPKLQANYTALTPLWFLERAATVHPTRTAVVHGSERYSWLQTYHRCRRLASALNNRN 64

Query: 61 ISNGDVVS 68
          I  G  V+
Sbjct: 65 IGAGSTVA 72


>29889.m003266 AMP dependent ligase, putative
          Length = 565

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 8  SVNYVPLSPISFLERAAKIYGDRKSVIYGSLEYSWSETYNRCLGLASVLTQLGISNGDVV 67
          + NY  L+P+ FL+RAA ++  R S+++GS  Y+W +TY RC  LAS LT   +  G  V
Sbjct: 13 AANYTALTPLLFLDRAATVHPSRVSLVHGSTHYTWLQTYKRCRRLASALTNHSVGFGSTV 72

Query: 68 S 68
          +
Sbjct: 73 A 73