Jatropha Genome Database

JcCA0116381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116381.10 - phase: 1 /partial
         (196 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29678.m000505 acetolactate synthase, putative                         346   4e-96
29929.m004506 acetolactate synthase, putative                         262   7e-71

>29678.m000505 acetolactate synthase, putative
          Length = 493

 Score =  346 bits (887), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 163/190 (85%), Positives = 177/190 (93%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKMVAVQRNL KFGIREIARTGKIALRREKMGE APFWRFSAASYPDLGEIR +D
Sbjct: 210 VTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGECAPFWRFSAASYPDLGEIRSED 269

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
           A LGSK R V G+D+TS GGDVYPVE SD F + QVLDAHWGVLNE+DTTGLRSHTLSML
Sbjct: 270 ALLGSKSRAVLGDDETSAGGDVYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSML 329

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VND+PGVLNIVTG+FARRGYN+QSLAVGHSETEG+SRITTVVPGTDESISKLVQQLYKL+
Sbjct: 330 VNDSPGVLNIVTGIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQQLYKLI 389

Query: 181 ELHEVRNFSN 190
           +LHEVR+ ++
Sbjct: 390 DLHEVRDLTH 399



 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 88  SDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAV 147
           +D  K   VL ++  V      + +R HT+S+ V D  G++N + GVFARRGYNI+SLAV
Sbjct: 64  ADSHKDDTVLSSNGSVPAAATLSKVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAV 123

Query: 148 GHSETEGISRITTVVPGTDESISKLVQQLYKLVELHEVRNFSNQ 191
           G ++ + +   T VV GT+  + ++V+QL KLV + +V + S++
Sbjct: 124 GLNKDKAL--FTIVVSGTERVLQQVVEQLQKLVNVMKVEDLSSE 165


>29929.m004506 acetolactate synthase, putative
          Length = 531

 Score =  262 bits (670), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 157/195 (80%), Gaps = 7/195 (3%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM AV RNL KF I+E++RTGKIALRRE+MGE APFWRFSAASYPDL  ++P +
Sbjct: 245 VTGDPGKMAAVLRNLSKFRIKELSRTGKIALRRERMGETAPFWRFSAASYPDLERMQPGN 304

Query: 61  APLGSKCR-----VVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSH 115
           A   +  +      + G   +S  GDVYPVE  DDF V QVLDAHWGVL ++D+TG  SH
Sbjct: 305 ALFSNPVKENSSGSLNGSTVSSSKGDVYPVE--DDFSVNQVLDAHWGVLYDEDSTGFWSH 362

Query: 116 TLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQ 175
           TLSMLVND+PGVLN++TGV +RRGYNIQSLAVG +E EG+SRITTV+PGT+ESI KLV Q
Sbjct: 363 TLSMLVNDSPGVLNMITGVISRRGYNIQSLAVGSAEREGLSRITTVIPGTNESIGKLVLQ 422

Query: 176 LYKLVELHEVRNFSN 190
           L+KL+++HEVR+ ++
Sbjct: 423 LHKLIDMHEVRDITH 437



 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 2/80 (2%)

Query: 112 LRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISK 171
           +++HT+S+ V D  G++N + GVFARRG+NI+SLAV  +E + +   T VV GTD  + +
Sbjct: 123 VQTHTISVFVGDESGIINRIAGVFARRGFNIESLAVCLNEDKAL--FTIVVRGTDNVLRQ 180

Query: 172 LVQQLYKLVELHEVRNFSNQ 191
           +V+QL KLV + +V + S +
Sbjct: 181 VVEQLNKLVSVIKVEDISRE 200