Jatropha Genome Database

JcCA0116311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116311.10 + phase: 0 /partial
         (364 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006435 origin recognition complex subunit, putative            578   e-165
29681.m001323 cdc6, putative                                           92   3e-19

>30169.m006435 origin recognition complex subunit, putative
          Length = 844

 Score =  578 bits (1490), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/357 (82%), Positives = 311/357 (87%), Gaps = 5/357 (1%)

Query: 1   MESIIRRCSVMNPKEYAKASNEGDDVFLCEYEYDIHWHTFKRLAEVDNCXXXXXXXXXXX 60
           MESIIR C VM+PKEY+KASNEGDD+FLCEYEYDI WH+FKRLAE+DN            
Sbjct: 327 MESIIRHCFVMSPKEYSKASNEGDDIFLCEYEYDIIWHSFKRLAEIDN----GEEVRNDE 382

Query: 61  XWNSSKDAESDTDEDIEYEEESVKNLQAKASSTHVLAANLRKGQFFGLQRIGVKRIPEHV 120
            WN SKDAES+TDED+EY EE+VKNLQA+A  +H LAAN RKGQFFGLQ+IG K+IPEHV
Sbjct: 383 DWNCSKDAESETDEDMEYGEENVKNLQARAFLSHELAANSRKGQFFGLQKIGAKKIPEHV 442

Query: 121 RCHXXXXXXXXXXXXXXXXXPKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGT 180
           RCH                 PKS PCRNKEMEE+TAFIKGAI DDQCLGRCLYIHGVPGT
Sbjct: 443 RCHKKTELEKAKATLLLATLPKSLPCRNKEMEEVTAFIKGAICDDQCLGRCLYIHGVPGT 502

Query: 181 GKTMSVLAVMRNLKSEVDAGNMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL 240
           GKTMSVLAVMRNL+SEVDAGN++PYCFVEVNGLKLASPENIYRVIYEAL+GHRV WKKAL
Sbjct: 503 GKTMSVLAVMRNLRSEVDAGNIKPYCFVEVNGLKLASPENIYRVIYEALTGHRVGWKKAL 562

Query: 241 HLLNERFSDGKK-GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 299
           +LLNERFSDGKK  KGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN
Sbjct: 563 NLLNERFSDGKKVRKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 622

Query: 300 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKV 356
           TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGID FEKQAIEFASRKV
Sbjct: 623 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDAFEKQAIEFASRKV 679


>29681.m001323 cdc6, putative
          Length = 523

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 141 PKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLKSEVDAG 200
           P +  CR  E +++  F K  I  ++     LY+ G PGTGK++S+  V + L       
Sbjct: 107 PSTVVCREDEQKKVFDFCKACIEQEK--AGSLYVCGCPGTGKSLSMAKVKQQLVDWTKEA 164

Query: 201 NMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKALHLLNERFSDGKKGKGDDRPC 260
             +    + +N   L +   I+  I    S  + +   + HLL+ +    +      +  
Sbjct: 165 GFQCPDVLSMNCTSLTNTCEIFSKIIGKNSPRKRNSGSSSHLLHLQNLYSQHHLPGSKMM 224

Query: 261 ILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGIQR 319
           +++ DELD L+T++++VL+++    T P S+ I+IGIAN +DL ++ LPR+ S       
Sbjct: 225 LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQSLNCKPMV 284

Query: 320 LCFGPYNYQQLQEIISSRLKGID--VFEKQAIEFASRKV 356
           + F  Y+  Q+  I+  RL  +   +F  QA+E  +RKV
Sbjct: 285 ITFRAYSKDQILRILQERLMALSWTIFHPQALELCARKV 323