Jatropha Genome Database

JcCA0115811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0115811.10 - phase: 0 /partial
         (261 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28653.m000059 pin2-interacting protein x1, putative                   235   2e-62

>28653.m000059 pin2-interacting protein x1, putative
          Length = 405

 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/243 (58%), Positives = 165/243 (67%), Gaps = 4/243 (1%)

Query: 23  AVETEAFYPEEFKVEEVSPEWWGYKLGFVPGGLLGAQNKKKSSKTGNAQKCNERTAFLEE 82
           A ETEA Y  E K E VS EWWGYK GFV GG LGAQ+KKKS++T N Q  NERT F EE
Sbjct: 163 AYETEALYSAECKAEAVSQEWWGYKSGFVSGGFLGAQSKKKSNRTVNGQNHNERTVFHEE 222

Query: 83  DQENLYKLVQDNATAGKQGLGIKSQPKKIAGVRFQGKKTX-XXXXXXXXXXXXXXXXXXX 141
           DQENLYKLVQDNATAGKQGLGIKSQPKKIAGVRFQGK+T                     
Sbjct: 223 DQENLYKLVQDNATAGKQGLGIKSQPKKIAGVRFQGKRTSFTDSDDEDSADEDMDSADYD 282

Query: 142 XXXXENHNDAPAVENVEE-KVDNEISANFGSLGKRKRD--APGKNVDEQKVKLKKLCKRI 198
               E H+D    E+ +E    NE  A+  S GKRKRD     +N+D+QK+ LKKLCKR+
Sbjct: 283 SSVEEKHSDTSVKEDYDEGNASNENIAHLSSSGKRKRDNTPEMENIDKQKLNLKKLCKRL 342

Query: 199 LRQVPGESXXXXXXXXXIEEHSSTVFSNFSSKRDALTHLKQKLEGSQKFCVDGKRVSLMC 258
           L QVP ES         IEEHSS+ FS+FSSK+DA+ +LK+KLEGS+KF ++GKRVSL C
Sbjct: 343 LHQVPEESLKLKKLKILIEEHSSSAFSSFSSKKDAIAYLKRKLEGSRKFSIEGKRVSLRC 402

Query: 259 RRG 261
           RRG
Sbjct: 403 RRG 405