Jatropha Genome Database

JcCA0109511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109511.10 + phase: 0 
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29769.m000449 hypothetical protein                                    489   e-139

>29769.m000449 hypothetical protein
          Length = 417

 Score =  489 bits (1258), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 227/308 (73%), Positives = 258/308 (83%)

Query: 1   MIDIELVPXXXXXXXXXXXXPTFHCDLYDADLVRRIAQVFLPGLSAACVDNTTGGIFRSP 60
           M D+ELVP            P+FHCDLYDA++V +IAQV LPGL+AACVDNTTGGIFRSP
Sbjct: 1   MEDVELVPEKEKIEDGKEGCPSFHCDLYDAEIVHKIAQVLLPGLAAACVDNTTGGIFRSP 60

Query: 61  ASVAVEMRKEMIEYLTMRSETFVAETIILEGGQNEEISDHPYDIISDFVDDFASSKRNFF 120
           ASVAV++RKEMI+YLT RSE+FVAE+IILE G N E+SDHPYDII+DFVDDFASSKRNFF
Sbjct: 61  ASVAVDLRKEMIDYLTQRSESFVAESIILEDGPNTEVSDHPYDIIADFVDDFASSKRNFF 120

Query: 121 SRVQGWILSEKREDKIDDFVQEMEVNGFWLSDRREVIAQNLVKNVDYKNIFYCDKKFYTA 180
           SRV GW+LSEKRED +DDF QEME+NGFWL DRRE++AQ LVKNVD+KN F+CDKKF TA
Sbjct: 121 SRVSGWLLSEKREDNVDDFAQEMEINGFWLMDRRELVAQTLVKNVDFKNTFHCDKKFNTA 180

Query: 181 EELAEHVINCDFRTVNCTNDGCVSFFCASQLEKHDSTCPFKIIPCEQKCSDHIMRREMDR 240
           EELA HV+NC+FR++NC N+GC + FCAS LE HDS CPFKIIPCEQKCSD+IMRREMDR
Sbjct: 181 EELARHVVNCNFRSMNCRNEGCNAIFCASHLENHDSICPFKIIPCEQKCSDNIMRREMDR 240

Query: 241 HCITVCPMKLVNCPSMLWVVPAAITRSMIQQHCLDDLNSHLVYALKNIHKEASEEDLKDR 300
           HCITVCPMKLVNCP       + I R MIQ+HC DDL  HLV ALKNIHK ASEEDLK R
Sbjct: 241 HCITVCPMKLVNCPFYAVGCQSTIARHMIQKHCSDDLQLHLVCALKNIHKGASEEDLKQR 300

Query: 301 LDQIMQVS 308
           +DQI+Q S
Sbjct: 301 VDQIVQSS 308