Jatropha Genome Database

JcCA0109411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109411.10 + phase: 0 /partial
         (90 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000404 6,7-dimethyl-8-ribityllumazine synthase, putative       168   6e-43

>28623.m000404 6,7-dimethyl-8-ribityllumazine synthase, putative
          Length = 221

 Score =  168 bits (425), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGALETF++YSV EEDVDVVWVPGSFEIG+VAERLGKS  YHAILC
Sbjct: 84  VVARFNEIVTKKLLEGALETFERYSVNEEDVDVVWVPGSFEIGVVAERLGKSRKYHAILC 143

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAV+RGDTTHYDAVANSAASGVLSAG+NS
Sbjct: 144 IGAVVRGDTTHYDAVANSAASGVLSAGLNS 173