Jatropha Genome Database

JcCA0109021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109021.10 + phase: 0 
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000398 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...   166   3e-42
30131.m007140 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...   166   3e-42
29908.m006129 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...   166   3e-42
30170.m014224 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...   163   2e-41

>28623.m000398 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 92/122 (75%)

Query: 1   MATGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M++GFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122


>30131.m007140 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 92/122 (75%)

Query: 1   MATGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M++GFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122


>29908.m006129 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 169

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 92/122 (75%)

Query: 1   MATGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M++GFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 5   MSSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 64

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAG
Sbjct: 65  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 124

Query: 121 VR 122
           VR
Sbjct: 125 VR 126


>30170.m014224 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 90/122 (73%)

Query: 1   MATGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MA  FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MAPAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG+VGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGVVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122