Jatropha Genome Database

JcCA0097961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0097961.10 + phase: 0 /partial
         (411 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001075 splicing factor u2af large subunit, putative            553   e-158
29981.m000576 splicing factor u2af large subunit, putative             73   2e-13
30183.m001303 spliceosome associated protein, putative                 66   3e-11
28644.m000926 mRNA splicing factor, putative                           65   6e-11
30147.m014250 zinc finger protein, putative                            55   4e-08
30008.m000803 ribonucleoprotein, chloroplast, putative                 55   7e-08
27964.m000365 nucleolar phosphoprotein, putative                       53   2e-07
29675.m000389 nucleic acid binding protein, putative                   53   3e-07
28462.m000127 glycine-rich RNA-binding protein, putative               52   4e-07
30183.m001297 splicing factor, putative                                51   9e-07
30076.m004447 ribonucleoprotein, chloroplast, putative                 51   9e-07
30138.m003973 glycine-rich RNA-binding protein, putative               50   1e-06
30078.m002323 ribonucleoprotein, chloroplast, putative                 50   2e-06
30094.m000674 dc50, putative                                           50   2e-06
29633.m000882 glycine-rich RNA-binding protein, putative               50   2e-06
29908.m006046 RNA-binding region-containing protein, putative          49   3e-06

>29646.m001075 splicing factor u2af large subunit, putative
          Length = 549

 Score =  553 bits (1426), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/289 (94%), Positives = 272/289 (94%)

Query: 122 GFDMAPPPSAMLXXXXXXXXXXXQIPGTNPAISGMFPNMFPLGTGQQFGALPVMPVQAMT 181
           GFDMAPPPSAML           QIPGT PAI GMFPNMFPLGTGQQFG LPVMPVQAMT
Sbjct: 189 GFDMAPPPSAMLTGAAAVAAAAGQIPGTAPAIPGMFPNMFPLGTGQQFGTLPVMPVQAMT 248

Query: 182 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFV 241
           QQATRHARRVYVGGLPPTANEQSVATFFS VMAAIGGNTAGPGDAVVNVYINHEKKFAFV
Sbjct: 249 QQATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFV 308

Query: 242 EMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGS 301
           EMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNL AVGLTPGS
Sbjct: 309 EMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGS 368

Query: 302 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 361
           AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS
Sbjct: 369 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 428

Query: 362 VTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQ 410
           VTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQE VLLHAQQQIALQ
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQETVLLHAQQQIALQ 477


>29981.m000576 splicing factor u2af large subunit, putative
          Length = 844

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 53/199 (26%)

Query: 183 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 242
           QATR  RR+YV  +P  A+E++V    + ++ + G N        ++  I+ EK  A VE
Sbjct: 397 QATRPMRRLYVENIPAEASEKAVLERLNNLLISSGVNHIQGTQPCISCIIHKEKGQALVE 456

Query: 243 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 302
             + E+AS A++ DG  F G+ +K+RRP D+   +A+T GP        L A        
Sbjct: 457 FLTPEDASAALSFDGSYFSGSTIKIRRPKDFIMEIASTFGP--------LKA-------- 500

Query: 303 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 362
                          Y+F       + +  GP                  AF  Y D SV
Sbjct: 501 ---------------YHF-----ENIDDVNGPC-----------------AFVEYADQSV 523

Query: 363 TDIACAALNGIKMGDKTLT 381
           T  ACA LNG+K+G + ++
Sbjct: 524 TFRACAGLNGMKLGGQVIS 542


>30183.m001303 spliceosome associated protein, putative
          Length = 376

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 192 YVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI------NHEKKFAFVEMRS 245
           YVG L P  +E+ +   F Q         AGP   VVNVY+      N  + + FVE RS
Sbjct: 28  YVGNLDPQVSEELLWELFVQ---------AGP---VVNVYVPKDRVTNLHQGYGFVEFRS 75

Query: 246 VEEASNAMALDGII-FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 304
            E+A  A+ +  +I   G P++V + S             Q   +L++ A          
Sbjct: 76  EEDADYAIKIMNMIKLFGKPIRVNKAS-------------QDKKSLDVGA---------- 112

Query: 305 LEGPDRIFVGGLPYYFTEAQIRELLESFGPL-RGFDLVKDRETGNSKGYAFCVYQDLSVT 363
                 +F+G L     E  + +   +FG +     +++D ETGNS+G+ F  Y     +
Sbjct: 113 -----NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDAS 167

Query: 364 DIACAALNGIKMGDKTLTVRRA 385
           D A  A+NG  + ++ +TV  A
Sbjct: 168 DAAIEAMNGQYLCNRQITVSYA 189


>28644.m000926 mRNA splicing factor, putative
          Length = 509

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
           +FVG +PY  TE Q+ ++    GP+  F LV DRETG  KGY FC Y+D      A   L
Sbjct: 10  VFVGNIPYDATEEQLIDICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 69

Query: 371 NGIKMGDKTLTVRRANQGAN 390
            G ++  + L V  A    N
Sbjct: 70  QGYEINGRQLRVDFAENDKN 89


>30147.m014250 zinc finger protein, putative
          Length = 798

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
           +++G LP    +  +  L  +FG +    ++KDR TG SKGY F  Y+D+ + + A A++
Sbjct: 499 LYIGYLPPNLDDDGLIGLFSAFGDIVMAKVIKDRVTGVSKGYGFVKYRDIQMANNAIASM 558

Query: 371 NGIKMGDKTLTVRRANQ 387
           NG ++  +T+ VR A +
Sbjct: 559 NGYRIDGRTIAVRVAGK 575


>30008.m000803 ribonucleoprotein, chloroplast, putative
          Length = 285

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 25/148 (16%)

Query: 236 KKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA 294
           + FAFV M +VE+ +  +  LDG  F G  ++V        + +    P +P        
Sbjct: 154 RGFAFVTMSTVEDCNAVIENLDGSQFMGRILRV--------NFSDKPKPKEP-------- 197

Query: 295 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 354
             L P      E   ++FVG L +  T   + E  + +G + G  ++ D ETG S+GY F
Sbjct: 198 --LYP------ETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGF 249

Query: 355 CVYQDLSVTDIACAALNGIKMGDKTLTV 382
             Y   S  + A  +LNG+++  + + V
Sbjct: 250 VCYATRSEMENALVSLNGVELEGRAMRV 277


>27964.m000365 nucleolar phosphoprotein, putative
          Length = 557

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
            +F+GGLP    E  +R+L E  G +    L+KD++TG SKG+AF  ++   V   A   
Sbjct: 110 EVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEE 169

Query: 370 LNGIKMGDKTL 380
           ++  +   KTL
Sbjct: 170 IHSKEFKGKTL 180


>29675.m000389 nucleic acid binding protein, putative
          Length = 642

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 94/237 (39%), Gaps = 47/237 (19%)

Query: 165 TGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPG 224
           T Q     P  PV    Q  +  ++ ++VG LP       V  FF            G G
Sbjct: 365 TPQATTKKPKTPVTPQVQ--STGSKTLFVGNLPFQVERADVEDFFK-----------GAG 411

Query: 225 DAV-VNVYINHEKKFA---FVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 280
           + V V   ++ +++F     VE  ++E A  A+ L+G    G  V++         LA  
Sbjct: 412 EVVDVRFALDQDQRFKGFGHVEFATIEAAHEALKLNGQSLNGREVRL--------DLARE 463

Query: 281 LGPSQPNPNLNLAAVGLTPGS-------AGGLEGPDRIFVGGLPYYFTEAQIRELL-ESF 332
            G   P           TP S        GG     +IFV G   +  E +IR  L E F
Sbjct: 464 RGERAP----------YTPYSGKDNSFQKGGRSQTQKIFVRGFDKFLGEDEIRNSLGEHF 513

Query: 333 ---GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 386
              G +    L  D ETG  KG A+  +QD +  + A    NG ++GD+ LTV  A 
Sbjct: 514 KTCGEITRISLPTDYETGAIKGMAYVEFQDATGFNKAL-EFNGSQLGDQYLTVEEAK 569


>28462.m000127 glycine-rich RNA-binding protein, putative
          Length = 276

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           RIFVGGL +  TE Q+      +G +    ++ +R+TG  +G+ F  + D    D A   
Sbjct: 8   RIFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRSMDDAIRE 67

Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQENVLLH 402
           ++G + GD+ ++V       N+ +P+  + L H
Sbjct: 68  MHGREFGDRVISV-------NKAQPKMGDDLDH 93


>30183.m001297 splicing factor, putative
          Length = 609

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 24/186 (12%)

Query: 186 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 245
           R  R V+   +   A+E+ V  FFS+               +++      K   ++E   
Sbjct: 223 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYIEFYD 276

Query: 246 VEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL 305
           V     A+AL G    G PV V+              PS+   NL  +   +  GS    
Sbjct: 277 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSTTTVNAGSGPYS 322

Query: 306 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 365
            G  R++VG L +  TE Q+R++ E FG +    L  D ETG+ KG+ F  +  L   + 
Sbjct: 323 GGARRLYVGNLHFNITEDQLRQVFEPFGIVELVQLPLD-ETGHCKGFGFVQFARL---ED 378

Query: 366 ACAALN 371
           A  ALN
Sbjct: 379 AKNALN 384


>30076.m004447 ribonucleoprotein, chloroplast, putative
          Length = 281

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 240 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLT 298
           FV M S+  A NA+A LDG    G  ++V+   D N       G   P P      +   
Sbjct: 143 FVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNS------GRRNPEP------LSSA 190

Query: 299 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 358
           P      E P +++VG L +     ++R+    FG +    ++ DR+ G ++ Y F  + 
Sbjct: 191 PTKNLFYESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFS 250

Query: 359 DLSVTDIACAALNGIKMGDKTLTVRR 384
                D A  + NG     + L VR+
Sbjct: 251 STKERD-AALSFNGKDFRGRILVVRK 275


>30138.m003973 glycine-rich RNA-binding protein, putative
          Length = 267

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           ++FVGG+ Y   +  +RE    +G +    ++ DRETG S+G+AF  Y        A  A
Sbjct: 41  KVFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQA 100

Query: 370 LNGIKMGDKTLTVRRANQ 387
           L+G  +  + + V  AN 
Sbjct: 101 LDGQDLHGRRVRVNYAND 118


>30078.m002323 ribonucleoprotein, chloroplast, putative
          Length = 280

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           ++FVG LP+    AQ+  L ES G +   +++ D+ TG S+G+ F     +   + A   
Sbjct: 93  KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQ 152

Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQEN 398
            NG ++  + L   R N G   P P++E+
Sbjct: 153 FNGYELEGRAL---RVNSG---PPPQRES 175



 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 36/203 (17%)

Query: 190 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRSV 246
           +++VG LP   +   +A  F          +AG  + V  +Y       + F FV M S+
Sbjct: 93  KLFVGNLPFNVDSAQLAGLF---------ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSI 143

Query: 247 EEA-SNAMALDGIIFEGAPVKV------RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTP 299
           +E  + A   +G   EG  ++V      +R S ++ S           P       G   
Sbjct: 144 DEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRS-----------PRFGGGGGGGE- 191

Query: 300 GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD 359
                LEG +R++VG L +      +       G +    +V DRE+G S+G+ F  Y  
Sbjct: 192 ----SLEG-NRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSS 246

Query: 360 LSVTDIACAALNGIKMGDKTLTV 382
               + A  +LNG ++  + + V
Sbjct: 247 AEEVENAIDSLNGAELDGRAIRV 269


>30094.m000674 dc50, putative
          Length = 210

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           R F+GGL +  ++  ++E  E FG L    +V D+ +G S+G+ F  + +    + A   
Sbjct: 8   RCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEE 67

Query: 370 LNGIKMGDKTLTVRRA--NQGANQ 391
           +NG+ +  +T+TV +A  +QG+ +
Sbjct: 68  MNGMDLDGRTITVDKAQPHQGSGR 91


>29633.m000882 glycine-rich RNA-binding protein, putative
          Length = 166

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           R FVGGL +  ++  + E   ++G +    ++ DRETG S+G+ F  + +      A   
Sbjct: 9   RCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIEG 68

Query: 370 LNGIKMGDKTLTVRRA 385
           +NG  +  + +TV  A
Sbjct: 69  MNGQNLDGRNITVNEA 84


>29908.m006046 RNA-binding region-containing protein, putative
          Length = 261

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
           ++FVGGL +     ++R+  E FG +    ++ D+ TG SKGY F  ++D      AC  
Sbjct: 14  KVFVGGLAWESPTEEMRKYFEQFGEILEAVIISDKNTGKSKGYGFVTFRDPESARRACVN 73

Query: 370 LNGIKMGDKTLTVRRAN 386
            N +  G      RRAN
Sbjct: 74  PNPVIDG------RRAN 84