Jatropha Genome Database

JcCA0090671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0090671.10 - phase: 0 /partial
         (119 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29864.m001463 Angio-associated migratory cell protein, putative       180   1e-46
30221.m002234 katanin P80 subunit, putative                            55   6e-09
29848.m004547 taf5, putative                                           52   5e-08
29917.m001945 katanin P80 subunit, putative                            52   5e-08
29647.m002072 WD-repeat protein, putative                              52   8e-08
29676.m001682 F-box and wd40 domain protein, putative                  51   1e-07
29872.m000541 coatomer beta subunit, putative                          49   5e-07
28179.m000477 WD-repeat protein, putative                              49   7e-07
30174.m008710 F-box and wd40 domain protein, putative                  48   8e-07
29851.m002476 F-box and wd40 domain protein, putative                  47   2e-06
29970.m001005 Polyadenylation factor subunit, putative                 47   2e-06
30170.m013969 F-box and wd40 domain protein, putative                  46   4e-06

>29864.m001463 Angio-associated migratory cell protein, putative
          Length = 471

 Score =  180 bits (457), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/88 (95%), Positives = 87/88 (98%)

Query: 1   GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
           GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDVSLRKCVI LTGHTLAITCVKWGG
Sbjct: 189 GHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVSLRKCVISLTGHTLAITCVKWGG 248

Query: 61  DGLIYTGSQDCTIKVWETTQGKLVRELK 88
           DG+IYTGSQDCTIKVWETTQGKL+RELK
Sbjct: 249 DGVIYTGSQDCTIKVWETTQGKLIRELK 276


>30221.m002234 katanin P80 subunit, putative
          Length = 803

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 23  FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCTIKVWETTQG 81
           F S S D + +IWD+  + C+    GHT  +  +++  DG  + +G +D T+K+W+ T G
Sbjct: 111 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 170

Query: 82  KLVRELK 88
           KL+ + K
Sbjct: 171 KLLHDFK 177


>29848.m004547 taf5, putative
          Length = 670

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 1   GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
           GH+  I  ++  P       R   SA +DG   +WD+S  +CV  L GH   +  + +  
Sbjct: 543 GHRSMILSLAMSP-----DGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSC 597

Query: 61  DG-LIYTGSQDCTIKVWETTQGKLV 84
           +G L+ +GS DCT+K+W+ T    V
Sbjct: 598 EGSLLASGSADCTVKLWDVTSSTKV 622



 Score = 52.0 bits (123), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 1   GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
           GH   +  + + PV        F SAS D  ARIW +   + +  L GH   + CV+W  
Sbjct: 459 GHNYPVWDVQFSPVG-----HYFASASHDRTARIWSMDRLQPLRILAGHLSDVDCVQWHA 513

Query: 61  D-GLIYTGSQDCTIKVWETTQGKLVR 85
           +   I TGS D T+++W+   G+ VR
Sbjct: 514 NCNYIATGSSDKTVRLWDVQSGECVR 539



 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 1   GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
           GH   +  + W     +A C    + S D   R+WDV   +CV    GH   I  +    
Sbjct: 501 GHLSDVDCVQW-----HANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSP 555

Query: 61  DG-LIYTGSQDCTIKVWETTQGKLVRELKVILDTNWYQPFSC 101
           DG  + +  +D TI +W+ + G+ V  L       W   FSC
Sbjct: 556 DGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSC 597


>29917.m001945 katanin P80 subunit, putative
          Length = 936

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 1   GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGG 60
           GH+   T I + P         F S S D + ++WD+  +  +    GHT  I+ +++  
Sbjct: 109 GHRSNCTAIEFHPFG-----EFFASGSADTNLKLWDIRKKGTLHTYKGHTRGISTIRFTP 163

Query: 61  DG-LIYTGSQDCTIKVWETTQGKLVRELK 88
           DG  + +G  D  +KVW+ T GKL+ + K
Sbjct: 164 DGRWVVSGGLDNVVKVWDLTAGKLLHDFK 192


>29647.m002072 WD-repeat protein, putative
          Length = 318

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 14  VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCT 72
           V+ N      VS S D   RIW+V   +C+  +  H++ +T V +  DG LI +GS D +
Sbjct: 119 VNFNPQSNLIVSGSFDETIRIWEVKTGRCMSVIRAHSMPVTSVHFNRDGSLIVSGSHDGS 178

Query: 73  IKVWETTQGKLVREL 87
            K+WE + G  ++ L
Sbjct: 179 CKIWEASTGAWLKTL 193


>29676.m001682 F-box and wd40 domain protein, putative
          Length = 462

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 16  LNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKV 75
           LN       SAS D   +IW +S  KC+  +  H  A+  +  G DGL++TGS D T+KV
Sbjct: 221 LNEDKSLLYSASWDKTFKIWRISDSKCLESVAAHDDAVNSLVTGLDGLVFTGSADGTVKV 280

Query: 76  W-ETTQGKLVREL 87
           W   TQGK  +  
Sbjct: 281 WRRETQGKGTKHF 293


>29872.m000541 coatomer beta subunit, putative
          Length = 914

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 23  FVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGD-GLIYTGSQDCTIKVWETTQG 81
            ++ S D  A++WD   + CV  L GHT  ++ V +  +  +I TGS+D T+++W +T  
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRLWHSTTY 261

Query: 82  KLVRELKVILDTNW 95
           +L   L   L+  W
Sbjct: 262 RLENTLNYGLERVW 275


>28179.m000477 WD-repeat protein, putative
          Length = 322

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 14  VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDG-LIYTGSQDCT 72
           V+ N      VS S D   RIWDV   KC+  L  H+  +T V +  DG LI + S D  
Sbjct: 122 VNFNPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGL 181

Query: 73  IKVWETTQGKLVREL 87
            ++W++  G  V+ L
Sbjct: 182 CRIWDSGTGHCVKTL 196



 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 21  RRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWG-GDGLIYTGSQDCTIKVWETT 79
           R  VSAS D   R+WDV+    +  L GHT  + CV +     +I +GS D T+++W+  
Sbjct: 87  RFLVSASDDKTIRLWDVTTGSQIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVK 146

Query: 80  QGKLVRELKVILD 92
            GK ++ L    D
Sbjct: 147 TGKCLKVLPAHSD 159


>30174.m008710 F-box and wd40 domain protein, putative
          Length = 1204

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 1    GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLTGHTLAITCVKWG- 59
            GH KWI  I      L       V+ S D  AR+W VS   C   L  H  AI CV +  
Sbjct: 1030 GHTKWIRSIRMVGDTL-------VTGSDDWTARVWSVSRGTCDAVLACHAGAILCVDYSM 1082

Query: 60   GDGLIYTGSQDCTIKVWETTQG 81
             D  I TGS D  ++ WE  +G
Sbjct: 1083 SDRGIITGSTDGLLRFWENEEG 1104


>29851.m002476 F-box and wd40 domain protein, putative
          Length = 448

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 25  SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVWE 77
           S S D   +IW +S  KC+  +  H  AI  V  G D L++TGS D T+K+W+
Sbjct: 237 SGSWDKTLKIWRISDYKCLESINAHEDAINSVAVGFDSLVFTGSADGTVKIWK 289


>29970.m001005 Polyadenylation factor subunit, putative
          Length = 582

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 2   HKKWITGISWEPVH--LNAPCRRFV--SASKDGDARIWDVSLRKCVICLTGHTLAITCVK 57
           H K I  I W P     N P ++ V  SAS D   ++WDV L K +  L+GH   +  V 
Sbjct: 458 HSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVELGKLLCTLSGHRDPVYSVA 517

Query: 58  WGGDG-LIYTGSQDCTIKVWETTQGKLVR 85
           +  +G  + +GS D +I +W   + K+V+
Sbjct: 518 FSPNGEYLASGSLDRSINIWSLKEVKIVK 546


>30170.m013969 F-box and wd40 domain protein, putative
          Length = 470

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 25  SASKDGDARIWDVSLRKCVICLTGHTLAITCVKWGGDGLIYTGSQDCTIKVWETTQ 80
           SAS D   ++W +S  KC+  ++ H  A+  V    +G+++TGS D T+KVW+  Q
Sbjct: 234 SASWDRTFKVWRISDSKCLESISAHDDAVNSVVATTEGMVFTGSADGTVKVWKREQ 289