Jatropha Genome Database

JcCA0088981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0088981.10 + phase: 1 /pseudo/partial
         (118 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014368 superoxide dismutase [fe], putative                     137   7e-34
29799.m000633 superoxide dismutase [fe], putative                      82   5e-17
33549.m000044 superoxide dismutase [fe], putative                      58   9e-10
29729.m002354 superoxide dismutase [mn], putative                      55   5e-09
29729.m002353 superoxide dismutase [mn], putative                      54   1e-08

>30147.m014368 superoxide dismutase [fe], putative
          Length = 305

 Score =  137 bits (346), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 77/106 (72%)

Query: 13  KKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSAR 72
           KKLVVVKSPNAV PLVWDY PLLTIDVWEHAYYLDFQNRRPDYISTF+EKLVSWEAVSAR
Sbjct: 200 KKLVVVKSPNAVIPLVWDYYPLLTIDVWEHAYYLDFQNRRPDYISTFLEKLVSWEAVSAR 259

Query: 73  LXXXXXXXXXXXXXXXXXXXXXXXSVPGSEAAELYVDSESEDSEAE 118
           L                         P S+A E+Y+DSE+++SEA+
Sbjct: 260 LEAAKAQVSEREQEERRKSEEDEDVTPSSDAVEMYLDSENDESEAD 305


>29799.m000633 superoxide dismutase [fe], putative
          Length = 265

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 52/69 (75%), Gaps = 2/69 (2%)

Query: 5   ILARQKRTKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLV 64
           +L R++R  +L ++K+ NA NPLVWD  P++ +D+WEHAYYLD++N R  Y++ F+  L+
Sbjct: 182 VLKREER--QLAIIKTSNANNPLVWDDIPIICLDMWEHAYYLDYKNDRGKYVNAFMNHLI 239

Query: 65  SWEAVSARL 73
           SW AV AR+
Sbjct: 240 SWNAVMARM 248


>33549.m000044 superoxide dismutase [fe], putative
          Length = 244

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 5   ILARQKRTKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLV 64
           ++     T +L++++  N      W   P+L +DV+EHAYYL +QNRR DY++     ++
Sbjct: 167 VVGYHPATGRLMILQCENHQKLTAWGIQPVLILDVFEHAYYLKYQNRRNDYVNQLFS-II 225

Query: 65  SWEAVSARL 73
           +W+  ++RL
Sbjct: 226 NWDNAASRL 234


>29729.m002354 superoxide dismutase [mn], putative
          Length = 234

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVWD---YSPLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
           L   K +KKLVV  + N  +PLV       PLL IDVWEHAYYL ++N RPDY+   I K
Sbjct: 159 LGVDKASKKLVVETTANQ-DPLVTKAPTLVPLLGIDVWEHAYYLQYKNVRPDYLKN-IWK 216

Query: 63  LVSWEAVS 70
           +++W+  S
Sbjct: 217 VMNWKYAS 224


>29729.m002353 superoxide dismutase [mn], putative
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVWDYS---PLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
           L   K +KKLVV  + N  +PLV       PLL IDVWEHAYYL ++N RPDY+ + I  
Sbjct: 164 LGVDKDSKKLVVATTQNQ-DPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKS-IWN 221

Query: 63  LVSWEAVS 70
           +++W+  S
Sbjct: 222 VMNWKYAS 229