Jatropha Genome Database

JcCA0087501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0087501.10 + phase: 0 /pseudo/partial
         (147 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29669.m000793 conserved hypothetical protein                           56   7e-09

>29669.m000793 conserved hypothetical protein
          Length = 335

 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query: 41  KILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEVL 100
           K +  +I   +  D  S     + +  R  +DL KPL + + + +   K +W+ FRYE L
Sbjct: 10  KAIGARIGTVLDIDDTSMEGLERSVRLRIRIDLRKPLRKRTKIAMGSNKDMWVFFRYERL 69

Query: 101 PNFCFLDGRCGHTYRSCDDYDFGEPYN 127
           P+FC++ G  GH  R CD     + Y+
Sbjct: 70  PSFCYVCGCLGHVMRDCDSRTEDDGYD 96