Jatropha Genome Database

JcCA0081341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.30 - phase: 0 
         (156 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29625.m000710 Iron-binding protein iscA, putative                     147   2e-36
28325.m000058 Iron-binding protein iscA, putative                      89   6e-19
29583.m000188 Iron-sulfur assembly protein IscA, chloroplast pre...    69   1e-12
29839.m000442 iron-sulfur cluster assembly protein, putative           69   1e-12
29625.m000704 iron-sulfur cluster assembly protein, putative           68   2e-12

>29625.m000710 Iron-binding protein iscA, putative
          Length = 95

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 77/79 (97%)

Query: 57  MKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGIKLVVDNISYD 116
           MKELQ SEGSA+EK+LRLGVETGGCSGFQYVFDL++K+N DDRVFE+EG+KLVVDNISYD
Sbjct: 1   MKELQVSEGSAEEKMLRLGVETGGCSGFQYVFDLESKMNPDDRVFEKEGVKLVVDNISYD 60

Query: 117 FVKGATIDYVEELIRSAFV 135
           FVKGATIDYVEELIRSAFV
Sbjct: 61  FVKGATIDYVEELIRSAFV 79


>28325.m000058 Iron-binding protein iscA, putative
          Length = 116

 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 2/108 (1%)

Query: 47  IHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGI 106
           I  TD+   ++ +L   EG+ D KL R+ V+ GGCSGFQY F  D  +N DD    + G+
Sbjct: 11  IIFTDSAAEKVAQLIEEEGNPDLKL-RVFVQGGGCSGFQYGFTFDEIVNEDDTTMVKNGV 69

Query: 107 KLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMV 154
           +L++D++SY ++ GA IDY ++L  + FV+  NP A   C C SSF V
Sbjct: 70  QLLIDSMSYQYLVGAEIDYKDDLEGAQFVIK-NPQATSTCGCGSSFSV 116


>29583.m000188 Iron-sulfur assembly protein IscA, chloroplast
           precursor, putative
          Length = 178

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 46  AIHLTDNCVRRMKELQASEGSADEKL-LRLGVETGGCSGFQYVFDLDNKINL--DDRVFE 102
           AI +T+N +  + +++      DE L LR+GV+ GGCSG  Y  + +N+ N   DD V E
Sbjct: 69  AISVTENALNHLNKMRKDR---DEDLCLRIGVKQGGCSGMSYTMEFENRSNARPDDSVIE 125

Query: 103 REGIKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVK 155
             G  +V D  S  FV G  +DY + LI   F    NP+A   C C  SF  +
Sbjct: 126 YNGFVIVCDPKSLLFVFGMQLDYSDALIGGGFSFK-NPNATQTCGCGKSFAAE 177


>29839.m000442 iron-sulfur cluster assembly protein, putative
          Length = 132

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 45  DAIHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFERE 104
           +A+ LTD    R++ L           LRLGV+  GC+G  Y  +  ++    D + E +
Sbjct: 14  EALSLTDAAAARIRHLLVQR---QRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDK 70

Query: 105 GIKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMV 154
           G+K+++D  +   V G  +D+V++ +RS F+  INP++ G C C  SFM 
Sbjct: 71  GVKILIDPKALMHVIGTKMDFVDDKLRSEFIF-INPNSKGQCGCGESFMT 119


>29625.m000704 iron-sulfur cluster assembly protein, putative
          Length = 138

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 46  AIHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREG 105
           A+ LTD    R++ L           L+LGV+  GC+G  Y  +  ++    D + E +G
Sbjct: 21  ALTLTDAAASRIRHLLQQR---QRPFLKLGVKARGCNGLSYTLNYADEKAKFDELVEEKG 77

Query: 106 IKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMV 154
           +K+++D  +   V G  +D+V++ +RS FV  INP++ G C C  SFM 
Sbjct: 78  VKILIDPKALMHVIGTKMDFVDDKLRSEFVF-INPNSKGQCGCGESFMT 125