Jatropha Genome Database

JcCA0081341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.10 + phase: 2 /partial
         (70 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001559 60S ribosomal protein L10a, putative                    121   6e-29
30055.m001561 60S ribosomal protein L10a, putative                    120   1e-28

>30055.m001559 60S ribosomal protein L10a, putative
          Length = 142

 Score =  121 bits (304), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 60/70 (85%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  LRE I+T++T SK   R FT TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 13 KLQSEALREAITTIMTASKEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 72

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 73 KICMLGDAQH 82


>30055.m001561 60S ribosomal protein L10a, putative
          Length = 218

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 59/70 (84%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  LRE I+T++  SK   R FT TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 10 KLQSEALREAITTIMAASKEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 69

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 70 KICMLGDAQH 79