Jatropha Genome Database

JcCA0081161.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081161.30 + phase: 2 /TE
         (716 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30061.m000297 conserved hypothetical protein                           68   2e-11
29703.m001529 conserved hypothetical protein                           62   1e-09
29648.m001953 conserved hypothetical protein                           54   2e-07

>30061.m000297 conserved hypothetical protein
          Length = 366

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 12/106 (11%)

Query: 9   GXPIMSYLFLICVEIFLGMIHKAEREHQIHGIKIYYGAPSISYLLFANDSIIFXTTSTAE 68
           G P+  YLFL C E F  +I KAE    +HG+K+Y  APS+SYL F +D +IF   +  E
Sbjct: 239 GGPLSPYLFLFCAEAFASLIRKAESAWILHGVKVYRRAPSVSYLFFKDDYVIFAKANKDE 298

Query: 69  VDKVIQILCDXRISGNLKKYEISLSAKTEDRRQKDLTNQI--RVHK 112
           +D +  ++ D         YE++ S     R +K++  QI  RV+K
Sbjct: 299 IDVIKHLIQD---------YEVA-SGHMIGRSKKEIFRQIEGRVNK 334


>29703.m001529 conserved hypothetical protein
          Length = 171

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 11  PIMSYLFLICVEIFLGMIHKAEREHQIHGIKIYYGAPSISYLLFANDSIIFXTTSTAEVD 70
           P+  YL ++C E    M  K +    ++G K+  GAPS+++  F ++S  F   +  E  
Sbjct: 43  PLSPYLSILCAEGLSAMFRKLDEMGLLYGCKVARGAPSVNHPFFVDNSYFFFKANMMESS 102

Query: 71  KVIQILCDXRISGNLKKYEISLSAKTEDRRQKDLTNQIRVHKVDQHSKYLELPIIIGRKK 130
            V  I         LK YE     K  DRR +D+   + V +   H  YL LP IIGR +
Sbjct: 103 HVTNI---------LKLYE-----KEADRR-RDVCGILGVQEALDHGNYLGLPSIIGRNR 147

Query: 131 KLVFSNLVDKIAKKTNEMKGKIF 153
           K+   + ++       E+  KI+
Sbjct: 148 KIALRSNMEAFTWMEQEIPLKIW 170


>29648.m001953 conserved hypothetical protein
          Length = 460

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 9/137 (6%)

Query: 27  MIHKAEREHQIHGIKIYYGAPSISYLLFANDSIIFXTTSTAEVDKVIQIL---CDXRISG 83
           M+ K  +E +IHG KI    P IS +LFA+D+++       E  K+  IL   C  + SG
Sbjct: 1   MMEKGVQERRIHGFKIKPDCPVISSILFADDTMVMGNALAEEAQKLKSILFNYC--KASG 58

Query: 84  ---NLKKYEISLSAKTEDRRQKDLTNQIRVHKVDQHSKYLELPIIIGRKKKLVFSNLVDK 140
              NL+K+E+  S  T  R ++ + N +R  + +   K L +P   GR K   F N V +
Sbjct: 59  QRVNLQKFEVLYSRNTRLRVKERINNILRFKESEAIKKCLGVPRDWGRSKVQTF-NPVGQ 117

Query: 141 IAKKTNEMKGKIFIKSK 157
             + +++++ + FI  K
Sbjct: 118 NRQCSSDLERRTFIPLK 134