Jatropha Genome Database

JcCA0081131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081131.20 + phase: 0 
         (253 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014286 conserved hypothetical protein                          316   7e-87
29784.m000367 conserved hypothetical protein                          134   4e-32

>30170.m014286 conserved hypothetical protein
          Length = 275

 Score =  316 bits (809), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 171/276 (61%), Positives = 205/276 (74%), Gaps = 24/276 (8%)

Query: 1   MEKQ----PKSKNNILKFLPKAASAVYFHNPPFSPNRDRRSDNNYCH---RLKAHVGKGF 53
           MEKQ     K KN ILKFLPKAASAV F NPPFSP RD+R    + H   R+K+HVGKG+
Sbjct: 1   MEKQHQQAAKPKNKILKFLPKAASAVSFQNPPFSPGRDKRIPEYHQHFHNRVKSHVGKGY 60

Query: 54  SGPFVSMIPDEVRRKP-KNGSFETQEPTSPKVSCIGQIKHKKKMVN-------KTKRTSP 105
           SGP VS+IPDE RR+  KNGSFE  EPTSPK+SC+GQIKHKKK++N       K + T P
Sbjct: 61  SGPIVSIIPDEARRRTSKNGSFENHEPTSPKISCMGQIKHKKKIINSSSKNKAKNQETEP 120

Query: 106 PKEIKAVSSPRDVKKHASKFKRLFSISAK-PTAGRR-SDASIYDRPPLSD---RAPSLGQ 160
            K     +  R++KKHA   KR+FS + K P  GRR SDAS+YD+PPL+D   RAP+L Q
Sbjct: 121 EKSTSTSTPRREIKKHALTIKRMFSNAVKVPEHGRRRSDASMYDKPPLTDTSHRAPALSQ 180

Query: 161 MKRFASGRDTFSNFDWTAQITPVESDHRDYSSD--EDDRMYCHQGEEDEVIIPFSAPMLI 218
           +KRFASGRDTF+NFDWT+Q+ P ESDHR+Y SD  E++R   H  +ED VIIPFSAP+++
Sbjct: 181 LKRFASGRDTFANFDWTSQVVPAESDHRNYYSDDEEEERHSDHDYDED-VIIPFSAPIIV 239

Query: 219 GSGAA-LQPRKEVNLWKRRTMNPPKPLQLNLGVRTT 253
           G G   LQPRKEVNLW+RRTMNPPKPLQLN+ VRTT
Sbjct: 240 GPGVGNLQPRKEVNLWRRRTMNPPKPLQLNVMVRTT 275


>29784.m000367 conserved hypothetical protein
          Length = 219

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 130/255 (50%), Gaps = 45/255 (17%)

Query: 1   MEKQPKSKNNILKFLPKAASAVYFHNPPFSPNRDRRSDNNYCHRLKAHVGKGFSGPFVSM 60
           M K  KSK+ I   LPKAA  V F +PP SP R             A+  KG S P VS+
Sbjct: 1   MGKLQKSKSKISDLLPKAAGPVTFLSPPPSPAR-------------ANSWKGLSSPRVSL 47

Query: 61  IPDEVRRKPKNGSFETQEPTSPKVSCIGQIKHKKKMVNKTKRTSPPKEIKAVSSPRDVKK 120
           IP E+RRK +  SF+ +EPTSPKVSC+G+IK++K+  N+TK+ + P ++  + S   +  
Sbjct: 48  IPKEIRRKARILSFDAREPTSPKVSCMGKIKNRKRNKNETKKWNNPTKLDMLVS--SLSS 105

Query: 121 HASKFKRLFSISAKPTAGRRSDASIYDRPPLSDRAPSLGQMKRFASGRDTFSNFDWTAQI 180
             +   ++F    +      SD S       + RA S  Q+K+FASGR    +FDW A +
Sbjct: 106 SGAMILKIFKGKQEIEERDASDKSPTTIAERAVRASSSSQVKKFASGRGVLKDFDWKAHV 165

Query: 181 T---------PVESDHRDYSSDEDDRMYCHQGEEDEVIIPFSAPMLIGSGAALQPRKEVN 231
                     P +  ++D   D + R  C                      +++PRKEVN
Sbjct: 166 AGAADAESNCPQDDKNQDKERDVETRTEC---------------------ISVEPRKEVN 204

Query: 232 LWKRRTMNPPKPLQL 246
           LWK+R ++PP+PLQL
Sbjct: 205 LWKKRAISPPRPLQL 219