Jatropha Genome Database

JcCA0080751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.20 - phase: 0 /partial
         (413 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29949.m000119 conserved hypothetical protein                           55   4e-08
29993.m001071 conserved hypothetical protein                           54   1e-07
29852.m002022 conserved hypothetical protein                           52   4e-07
29890.m000286 conserved hypothetical protein                           51   1e-06
29989.m000417 conserved hypothetical protein                           50   3e-06
29770.m000335 conserved hypothetical protein                           49   6e-06
30125.m001256 conserved hypothetical protein                           48   9e-06

>29949.m000119 conserved hypothetical protein
          Length = 918

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 93/226 (41%), Gaps = 26/226 (11%)

Query: 22  LDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTLVFGFGKMTLTPVD 81
           L P     V  AGFG Y   +       P  +  AL+ERW   T+T  FG G+MT+T  D
Sbjct: 47  LTPKQIELVEKAGFG-YLRKIPAISLDNP--LISALVERWRRETNTFHFGVGEMTVTLQD 103

Query: 82  YAAITGLHFTGPVPPLDARYQTVAIGAQLVRSLLGVTTQTRYTVQGCMSYETVFRFWAER 141
            A + GL   G  P +   + T ++   +   LLG    + Y   G +        W + 
Sbjct: 104 VALLLGLAIDG-RPVIGITHTTCSL---VCERLLGKAPDSSYASGGMVKLS-----WLK- 153

Query: 142 IRTRLEAWRELPEDVRPAAPAYTREERDQAAWSFLFYIISSQLLCTSQNKGDPAV-LECL 200
                E +   PE+    AP    EE ++   ++L Y++ S +  T+     P + L   
Sbjct: 154 -----EYFSHCPEN----API---EEVERCTRAYLLYLVGSTIFSTTTGNKVPVMYLPLF 201

Query: 201 RDLSQVGSFDWATLGLAHLYHGLDVWTHGSGESNWLFIRPLEVWSY 246
            +  + G+F W    LA LY  L      S  +    +  L+ WSY
Sbjct: 202 ENFEEAGNFAWGAAALAFLYRALGNACVKSQSTICGCLTLLQCWSY 247


>29993.m001071 conserved hypothetical protein
          Length = 837

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 89/220 (40%), Gaps = 28/220 (12%)

Query: 29  RVVAAGFGDYAAGLRRT-QPHFPPAMRYALMERWNDCTHTLVFGFGKMTLTPVDYAAITG 87
           +V  AGFG     LRR         +  AL+ERW   T+T     G+MT+T  D A + G
Sbjct: 75  QVEMAGFG----YLRRIPSISLDNPLISALIERWRKETNTFHLRVGEMTITLEDVALLLG 130

Query: 88  LHFTGPVPPLDARYQTVAIGAQLVRSLLGVTTQTRYTVQGCMSYETVFRFWAERIRTRLE 147
           L   G  P L   Y +      +    LG      Y     MS   V   W +      E
Sbjct: 131 LAIDGE-PVLGVTYTSC---KPICEKFLGKVPDAGY-----MSGGMVKLSWLK------E 175

Query: 148 AWRELPEDVRPAAPAYTREERDQAAWSFLFYIISSQLLCTSQNKGDPAV-LECLRDLSQV 206
            + + PED    AP    EE ++   ++L Y++ S +  T+     P + L    D  + 
Sbjct: 176 YFSQCPED----APL---EEIERHTRAYLLYLVGSTIFSTTTGNKVPIMYLPLFEDFEKA 228

Query: 207 GSFDWATLGLAHLYHGLDVWTHGSGESNWLFIRPLEVWSY 246
           G++ W    LA LY  L   T  S  +    +  L+ WSY
Sbjct: 229 GNYAWGAAALAFLYRALGRATLKSQSTISGCLTLLQCWSY 268


>29852.m002022 conserved hypothetical protein
          Length = 115

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 56  ALMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLDAR 100
           AL+ERW+D THT V  F +MT+TP+ + A+TG  F G   PLD R
Sbjct: 27  ALLERWSDTTHTFVLHFREMTITPMHFTALTGTRFGGVSVPLDGR 71


>29890.m000286 conserved hypothetical protein
          Length = 230

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 16 SAFWDLLDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTLVFGFGKM 75
          S +W  L   M   +   GF  +   L R +P         L+ERW+D THT +  FG+M
Sbjct: 21 SEWWVQLLFYMGEMLEVIGFNTFLGTLTRFKPKNEVIAVTTLLERWSDTTHTFLLPFGEM 80

Query: 76 TLTPVDYAAITGLHFTG 92
          T+T +D+ A+T + F G
Sbjct: 81 TITSLDFIALTRVRFDG 97


>29989.m000417 conserved hypothetical protein
          Length = 73

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%)

Query: 18 FWDLLDPPMRARVVAAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTLVFGFGKMTL 77
          +WD L   +RA V   GF   A+ L              L+E+W+D  HT    F +MT+
Sbjct: 2  WWDELPAKVRAWVANIGFTQLASILHPLHVRHDVTTMTMLIEQWSDMKHTFQLHFREMTM 61

Query: 78 TPVDYAAITGL 88
          TP+DY A+T L
Sbjct: 62 TPLDYTALTEL 72


>29770.m000335 conserved hypothetical protein
          Length = 116

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 57  LMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFTGPVPPLDARYQTVAIG 107
           L+ERW D  H     F +MT+TP+DY A+ GLH+    P LD R++    G
Sbjct: 55  LIERWLDTMHNFQLHFREMTVTPLDYTALIGLHWDSNPPMLDYRFRQSTSG 105


>30125.m001256 conserved hypothetical protein
          Length = 276

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 32 AAGFGDYAAGLRRTQPHFPPAMRYALMERWNDCTHTLVFGFGKMTLTPVDYAAITGLHFT 91
          A  F  + + L R  P         L+ERW+D T+T +  FG+ T+ P+D+ A+ G+ F 
Sbjct: 3  ATDFHLFLSTLPRLTPKNNATAMTTLLERWSDTTYTFLLPFGEKTIMPLDFTALIGIRFG 62

Query: 92 GP 93
          GP
Sbjct: 63 GP 64