Jatropha Genome Database

JcCA0080751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.10 + phase: 2 /pseudo/partial
         (473 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006923 Transportin-3, putative                                 712   0.0  
30147.m014032 transportin, putative                                    85   9e-17

>30131.m006923 Transportin-3, putative
          Length = 1020

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/436 (83%), Positives = 390/436 (89%)

Query: 37  QIQSEGYYLQLGVKDALLNALLVAAKRFSSGPPXXXXXXXXXXXXXXXXXXEHGKPIEQL 96
           +IQSEGY+L +G KDALLNALLVAA+RFSSGP                   EHGKPIEQL
Sbjct: 76  KIQSEGYHLHIGAKDALLNALLVAAQRFSSGPLQLLTQICLALSALVLRAVEHGKPIEQL 135

Query: 97  FYSLRTLQNQDDSNMAVLEMLTVLPEEVVDTQNADGNISPAHRSQYGQELLSHTPTVLEF 156
           FYSL+TLQNQ+D N+AVLEMLTVLPEEVVDTQN+D +IS AHRSQYG+ELLSHTPTVLEF
Sbjct: 136 FYSLQTLQNQEDGNVAVLEMLTVLPEEVVDTQNSDSSISQAHRSQYGKELLSHTPTVLEF 195

Query: 157 LLEQSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSS 216
           LL QSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSS
Sbjct: 196 LLGQSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSS 255

Query: 217 SFDLAIEVLVELASRHEGLPQVLLCRVHFLKEVLLLPALNNGDEKIISGLACLMSEIGQA 276
           SFDLAIEVLVELASR+EGLPQVLLCRVHFLKEVLLLPAL+N DEK+I+GLACLMSEIGQA
Sbjct: 256 SFDLAIEVLVELASRYEGLPQVLLCRVHFLKEVLLLPALSNRDEKVINGLACLMSEIGQA 315

Query: 277 APSLIVEASVEALALADSLLSCVAFPSEDWEIADSTLQFWSTLASYILSPDTESSKNGKH 336
           APSLIVEASVEALAL D+LLSCVAFPS DWEIADSTLQFWSTLASYIL  D ES KNGKH
Sbjct: 316 APSLIVEASVEALALTDALLSCVAFPSADWEIADSTLQFWSTLASYILGLDAESVKNGKH 375

Query: 337 VEDVFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGLVQFRMNLAELLVDICQLLRP 396
           V+DVFFSVFSALLDALL+R QVDES FND +GMLDLPDGLVQFR NLAELLVDICQLLRP
Sbjct: 376 VQDVFFSVFSALLDALLMRVQVDESIFNDANGMLDLPDGLVQFRTNLAELLVDICQLLRP 435

Query: 397 VTFVQKLFFGGWASVNIPVPWKEVEAKLFALNVVSEVVLQEAQTFDFSVIIQLATMLSIR 456
           VTFVQKL FGGWAS ++PVPWKEVEAKLF LNVVSEVVLQE +TFDFS+I+QLAT+LS  
Sbjct: 436 VTFVQKLLFGGWASGSVPVPWKEVEAKLFVLNVVSEVVLQEGRTFDFSMIMQLATLLSSS 495

Query: 457 PSDKLKGFMCIVCQTV 472
           PS+K K  MCIV +++
Sbjct: 496 PSEKHKELMCIVYKSL 511


>30147.m014032 transportin, putative
          Length = 967

 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 154/346 (44%), Gaps = 48/346 (13%)

Query: 114 LEMLTVLPEEVVDTQNADGNISPAHRSQYGQELLSHTPTVLEFLLEQSQKTYDGGIQLHE 173
           LE+LTVLPEEV + + A     P  R Q+ +EL S     L  L           ++++E
Sbjct: 145 LELLTVLPEEVFNYKIA---ARPERRRQFEKELTSQMEVALNIL--------TACLKINE 193

Query: 174 RNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSSSFDLAIEVLVEL----A 229
              +VL    SW+R       P   L +HPL+    +SL      + A+ V+ EL     
Sbjct: 194 LKEQVLEAFASWLRLR--HGTPGSVLSSHPLVLTALSSLNSELLSEAAVNVISELIHYTT 251

Query: 230 SRHEG-------LPQVLLCRVHFLKEVLLLPALNNGDEKIISGLACLMSEIGQAAPSLIV 282
           S + G       L QVL+ +V  LKE L  P+    DE+ +  +A L +++G +   LI 
Sbjct: 252 SGNSGGISIQMPLIQVLVPQVMSLKEQLRDPS---KDEEDVKAIARLFADMGDSYVELIA 308

Query: 283 EASVEALALADSLLSCVAFPSEDWEIADSTLQFWSTLASYILSPDT------ESSKNGKH 336
             S EA+ + ++LL   + P  +++IA  T  FW +L   +   D+      E+S   + 
Sbjct: 309 TGSDEAMMIVNALLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYTSFGDETSIKAER 366

Query: 337 VED--VFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGLVQFRMNLAELLVDICQLL 394
                VF S + +L+  +  R Q  +   N    + DL D     R  +A++L+D   +L
Sbjct: 367 SRRLLVFRSAYESLVSLVSFRVQYPQDYQN--LSIEDLKD-FKHTRYAVADVLIDAASVL 423

Query: 395 RPVTFVQKLFF------GGWASVNIPVPWKEVEAKLFALNVVSEVV 434
                ++ L+         WA  N    W+  EA LF +  +S  V
Sbjct: 424 NGDATLKILYVKLAEAQACWA--NGHSEWRPAEAALFCIRAISNYV 467