Jatropha Genome Database

JcCA0080721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.20 + phase: 0 
         (575 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008951 conserved hypothetical protein                          644   0.0  
29813.m001533 Ribulose-1,5 bisphosphate carboxylase/oxygenase la...    56   4e-08
29582.m000252 [ribulose-bisphosphate carboxylase]-lysine N-methy...    50   3e-06

>30174.m008951 conserved hypothetical protein
          Length = 446

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/437 (74%), Positives = 365/437 (83%), Gaps = 19/437 (4%)

Query: 140 LQKKNLLSLYDDKVKGLMKKLLILDGDSEGEVCFEDFLWANSLFWSRALNIPLPQSYVFP 199
           LQKK LLSLYDDKVKGLMKKLL LDGDSE EV FEDFLWANSLFWSRALNIPLP SYVFP
Sbjct: 28  LQKKKLLSLYDDKVKGLMKKLLTLDGDSESEVSFEDFLWANSLFWSRALNIPLPHSYVFP 87

Query: 200 QIQEDQAINCSANNSESSHNDNSCEDLLNEKDEKRIKVPGVDNQVSGAISTPVQGDTLWV 259
           Q++EDQ  +CS  +SE S+NDNS  DL+NEKDE+                T  QG+T+WV
Sbjct: 88  QVEEDQENHCSTIDSELSYNDNSAGDLINEKDER-------------TTCTSSQGETVWV 134

Query: 260 EGLVPGIDFCNHATNLKAAATWEVDGTGLVTGIPFSMYLLSAQQTAFQIGKEISISYGNK 319
           EGLVPGIDFCNH  +LKAAATWEVDGTGLVTG+P SMYLLSA+QT  +  KEI ISYGNK
Sbjct: 135 EGLVPGIDFCNH--DLKAAATWEVDGTGLVTGVPSSMYLLSAEQTPIKTEKEIFISYGNK 192

Query: 320 GNEELLYLYGFVIENNPDDYLMVHYPAEAIQDVPFSDSKMQLLEAQKGELRCLLPKSLLD 379
           GNEELLYLYGFVI+NN DDYLMV+YP EAIQ+VPFSDSKMQLLEAQK E+RCLLPK LLD
Sbjct: 193 GNEELLYLYGFVIDNNTDDYLMVNYPVEAIQNVPFSDSKMQLLEAQKAEMRCLLPKGLLD 252

Query: 380 HGFFPVGTPNNDNNGKCKNDPVCNFSWSGQRKTPSYINKLVFPDDFLTSLRTIAMQEDEL 439
           HGFFPVGT  ND+N KCK D   N SWSGQR+TPSY+NKLVFP+DFLTSLRT+AMQEDEL
Sbjct: 253 HGFFPVGTSKNDSNFKCKTDQFGNCSWSGQRETPSYVNKLVFPEDFLTSLRTLAMQEDEL 312

Query: 440 YKVSSMLEELVGSDGERQPTDTEVRAAIWEACGDSGALQLLVDLLQAKMVDLEENSRTEE 499
           YKVSS+LEEL+GS+GERQPTD+EVRAA+WEACGDSGALQLLVDLLQ K+++LEE S TE+
Sbjct: 313 YKVSSLLEELIGSEGERQPTDSEVRAAVWEACGDSGALQLLVDLLQTKLLNLEEGSGTED 372

Query: 500 CDSELLERAQHVQNPEHQGRYESNL-RRAEIGGLNELELMSRNKWASIVYRRGQKVLTRL 558
           CDSELLE+A   ++PE  G  ++NL    E     +L+LMSRN+ ASIVYRRGQK LTRL
Sbjct: 373 CDSELLEKA---ESPEDLGVCDNNLSSNPESSSATQLQLMSRNRRASIVYRRGQKELTRL 429

Query: 559 FLKEAEHALQLSLSEGN 575
           FLKEAEHALQLSLS G+
Sbjct: 430 FLKEAEHALQLSLSGGS 446


>29813.m001533 Ribulose-1,5 bisphosphate carboxylase/oxygenase large
           subunit N-methyltransferase, chloroplast precursor,
           putative
          Length = 502

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 35/203 (17%)

Query: 9   LEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVS-DGVLLVVPLDLAITPMRVLQD 67
           LE F QWL    V       K     +G G+ + +D++ + V+L +P  L I P  V   
Sbjct: 52  LEIFWQWLSDQGVVSGKSPAKPGVVKEGLGLIAERDIARNEVVLEIPKKLWINPDAVAAS 111

Query: 68  PLIGPECRAMYEEGEVDDRFLMILFLMLERLRK-NSSWKPYLDMLPSTFGNPLWF----- 121
             IG  C  +     V       LFL+ E+L+K  S+W PYLD+LP T  + +++     
Sbjct: 112 D-IGNVCSGLKPWISV------ALFLIREKLKKEGSTWWPYLDILPDTTNSTIYWWVLLV 164

Query: 122 ------------TDDELLELKGTTLYRATQLQKKNL---LSLYDDKVKGLMKKLLILDGD 166
                       +++EL EL+GT L R T   K+ +    +  ++++    K+L      
Sbjct: 165 AFYVLVLSFQRRSEEELAELQGTQLLRTTLGVKEYMQREFAKVEEEILLPHKELF----- 219

Query: 167 SEGEVCFEDFLWANSLFWSRALN 189
               +  +DFLWA  +  SRA +
Sbjct: 220 -PSPITLDDFLWAFGILRSRAFS 241


>29582.m000252 [ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase, putative
          Length = 558

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 9/184 (4%)

Query: 8   KLEGFLQWLQANKVELRGCSIKFCGPDKGFGVFSSKDVSDG-VLLVVPLDLAITPMRVLQ 66
           K +   +W Q N V  R   +   G   G G  +++D+  G + L +P+ + I+   V  
Sbjct: 159 KEKSIAEWGQRNGVHSRLEIVYVEGA--GRGAIATEDLKVGDIALEIPVSIIISEELVRH 216

Query: 67  DPLIGPECRAMYEEGEVDDRFLMILFLMLERLRKNSSWKPYLDMLPSTFGNPLWFTDDEL 126
             +       + +   +    +++L+ M ER   NS  K Y D LP  F   L F  D +
Sbjct: 217 SDMY----HILEKIDGISSETMLLLWSMKERHNCNSKSKIYFDTLPKEFNTGLSFGVDAI 272

Query: 127 LELKGTTLYRATQLQKKNLLSLYDDKVKGLMKKLLILDGDSEGEVCFEDFLWANSLFWSR 186
           +   GT L+      K++L   YD+ V  L       D        +E FLWA  L++S 
Sbjct: 273 MASDGTLLFDEIMQAKEHLRVQYDELVPALCNNY--PDVFPPELYTWEQFLWACELWYSN 330

Query: 187 ALNI 190
           ++ I
Sbjct: 331 SMKI 334