Jatropha Genome Database

JcCA0080621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080621.10 + phase: 0 /partial
         (268 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m001997 cation efflux protein/ zinc transporter, putative       318   2e-87

>29647.m001997 cation efflux protein/ zinc transporter, putative
          Length = 479

 Score =  318 bits (814), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/251 (65%), Positives = 190/251 (75%), Gaps = 30/251 (11%)

Query: 11  KFLDPLAGLVVSGMILKAGLEIGYQSVFELVDAAIPAEDLDPVRQTILQVEGVKGCHRLR 70
           +FLDPLAGL+VSGMILKAGLE GYQSV ELVDAAIPAE LDP++QTILQVE VKGCHRLR
Sbjct: 258 RFLDPLAGLLVSGMILKAGLETGYQSVLELVDAAIPAEHLDPIKQTILQVEDVKGCHRLR 317

Query: 71  GRRAGSSLHLDVHIEVDPFSSVSAAHGIGEKVRQEIHKCHPGIAEVFIHIGFSPCEIDLH 130
           GRRAGSSLHLDVHIEVDPF SVSAAH IGEKVRQEIH+ +P IAEVFIHI   P  +   
Sbjct: 318 GRRAGSSLHLDVHIEVDPFLSVSAAHEIGEKVRQEIHESYPEIAEVFIHI--DPAYLHFS 375

Query: 131 NNVEETANENRNVSLEDRDIEMIVSNVFQSKFPERMEVERITRHCLQSKMLVEIEVSMPP 190
           +NVE TA+++R +SL+D+DI MI+SN F SKFPE+MEVERITRH LQ K+L+E+EVS+PP
Sbjct: 376 SNVEGTADQDRYISLDDKDIAMIISNTFLSKFPEKMEVERITRHFLQQKVLLEMEVSLPP 435

Query: 191 EILIRYIIQPAHDVCYCSMQHLPLLHACVITNRDAKEVANAAEKEILKAASNIMTVRIQL 250
           +ILI                             DA  VA  AEKEILK AS+I+ V IQL
Sbjct: 436 DILI----------------------------GDAMVVAEKAEKEILKVASDIIQVSIQL 467

Query: 251 RLGHPFPKFVY 261
           RLG+P PKF +
Sbjct: 468 RLGNPVPKFGF 478