Jatropha Genome Database

JcCA0080591.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.30 - phase: 0 
         (267 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006272 conserved hypothetical protein                          193   8e-50
29840.m000626 chromodomain helicase DNA binding protein, putative      99   2e-21
30128.m009008 hypothetical protein                                     84   7e-17

>30169.m006272 conserved hypothetical protein
          Length = 602

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 151/277 (54%), Gaps = 56/277 (20%)

Query: 12  KEEQTSIDQVPSKTLDKV----NCLQRLSGLMDPRRLHYGQSKFGRQLLGFPSHRASGAE 67
           KE++TSID++  KT D+     NC Q L    DPRR    Q+KF     G  SH+A  A 
Sbjct: 361 KEKKTSIDKLLYKTSDQFHGHSNCFQNLPITTDPRRW---QTKFVGNYPGCSSHQAD-AG 416

Query: 68  CSTGINLNSQEIGDGDLSLQKLNMSVVPQGGH-----------------VNLMMKMSNAS 110
           CS  I ++ Q+  + D+SLQ L    +  G +                    M +MS   
Sbjct: 417 CSPRIGMSYQKSSNPDVSLQMLIPPAISIGENGRPWMNSASNLSSTSQLSGCMTEMSRNL 476

Query: 111 RKDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTIEDLSRRWEKERLK 170
           RKD+ MVDVWLEEELD LWIGVRRHG GNWE MLRDPSLSFSKHKTIEDLS+RW+KERL+
Sbjct: 477 RKDEAMVDVWLEEELDSLWIGVRRHGPGNWERMLRDPSLSFSKHKTIEDLSQRWKKERLR 536

Query: 171 ILYPGNLPIHGSGNLPSDMFNNSVDYRKKRLKAADSTLPFVEDQLPSCGEKKVQQNLLLG 230
           IL PG                                L F  +QLPS    + Q NLLLG
Sbjct: 537 ILNPG-------------------------------ILRFPRNQLPSSRGNRAQPNLLLG 565

Query: 231 GLINISMLRRDTEESEKSNQTQQLKAKEFSSEDTISD 267
           GLINI+ ++ D E S  S Q  + + KE SSE TISD
Sbjct: 566 GLINIANVKIDQEVSRNSGQVHRHEGKELSSEGTISD 602


>29840.m000626 chromodomain helicase DNA binding protein, putative
          Length = 2257

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 60/81 (74%), Gaps = 3/81 (3%)

Query: 101  NLMMKM---SNASRKDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTI 157
            N+MM+    SN   + +   D W E+ELDFLWIGVRRHG+GNW+AMLRDP L FSK+K+ 
Sbjct: 1705 NIMMRTGSGSNNLYRKKSRTDGWSEDELDFLWIGVRRHGRGNWDAMLRDPRLKFSKYKSS 1764

Query: 158  EDLSRRWEKERLKILYPGNLP 178
            +DL+ RWE+E++KIL    LP
Sbjct: 1765 DDLAARWEEEQMKILDGPPLP 1785


>30128.m009008 hypothetical protein
          Length = 930

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 45/61 (73%)

Query: 112 KDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTIEDLSRRWEKERLKI 171
           K +    +WLEEELD LWIGVRRHG+ NW AMLRDP L FS  +T  DL+ +WE+E+ K+
Sbjct: 631 KFKSYTTLWLEEELDSLWIGVRRHGRDNWHAMLRDPRLHFSSWRTARDLAEQWEEEQAKL 690

Query: 172 L 172
           L
Sbjct: 691 L 691