Jatropha Genome Database

JcCA0080591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.20 + phase: 0 
         (440 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006271 conserved hypothetical protein                          733   0.0  

>30169.m006271 conserved hypothetical protein
          Length = 429

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/440 (80%), Positives = 382/440 (86%), Gaps = 11/440 (2%)

Query: 1   MGISFKYWDECVEPQDMEAMWREPEVLTEWLDAGETKGQKVHLSRDPDGQPYLTQTEMKA 60
           MGISFK+WDECV+PQDMEAMWREPEV TEWLDAGE KGQK+HLSRDPDGQPYLTQTEMKA
Sbjct: 1   MGISFKFWDECVDPQDMEAMWREPEVTTEWLDAGEVKGQKIHLSRDPDGQPYLTQTEMKA 60

Query: 61  VAEIIVRRHFDSQILPAMLCAIAELASDRQLLATRYDKKTKQTTVGIMQLLPATMEWLIR 120
           VA+IIVRR+FDSQILP MLCAIAELASDR LLAT YDKKTKQTT+GIMQ+LP T EWL+R
Sbjct: 61  VADIIVRRYFDSQILPDMLCAIAELASDRLLLATNYDKKTKQTTMGIMQILPKTAEWLVR 120

Query: 121 DLGYRVYKGEGNPDILYRPFVSVYFGAAYLQWLSNFERQERSEEFVVRAYKGGIEKANHK 180
           DLGYR+Y  E NPDILYRPFVSVYFGAAYL+WLSNFE++ERSEEFVVRAYKGGI+KA HK
Sbjct: 121 DLGYRIYDVEENPDILYRPFVSVYFGAAYLKWLSNFEQKERSEEFVVRAYKGGIKKATHK 180

Query: 181 STLQHWKRYLSVKESLPSRRFVDDGPSVDNXXXXXXXXXXXXXXXXXXXXXXQKTGGDYV 240
           STL +WKRYLSVKESLP RRFVDDGPSV+                         + G YV
Sbjct: 181 STLHYWKRYLSVKESLPFRRFVDDGPSVN------PCCPPSAPALAASQNTASNSDGQYV 234

Query: 241 YWDSRASPEDMQEMWNNSDVAREWIKSGEKRGKVRFSLDKDKRLYLSRVEVKIDLIQAVA 300
           +WDS+ SPEDM EMW+N+DV +EW KSGE+RGKVRFS DKDKR YLSR+EVK     AVA
Sbjct: 235 HWDSKTSPEDMLEMWSNADVTKEWTKSGERRGKVRFSHDKDKRPYLSRIEVK-----AVA 289

Query: 301 QTILSKHFSTRGVKPSVLCALAEMVSFRFVNGVGPQIGLMGIDYSTAFWLYMELGYRAYR 360
           + ILSK+FSTR VKPS+LCALAEMVS RFVNGVGP+ GLMGIDYSTAFWLYMELGYRAYR
Sbjct: 290 EIILSKYFSTRAVKPSILCALAEMVSMRFVNGVGPRTGLMGIDYSTAFWLYMELGYRAYR 349

Query: 361 VDSVDDLTKPFVSMYFGAAYLAYLSEYEGRERTPQFVVQAYLAGPKNVNLQETGPFWLKF 420
           VDSVDDLTKPFVSMYFGAAYLAYLSEYEGRERTPQFVVQAYL GPKNVNLQETGP WLKF
Sbjct: 350 VDSVDDLTKPFVSMYFGAAYLAYLSEYEGRERTPQFVVQAYLGGPKNVNLQETGPLWLKF 409

Query: 421 EEALSNYEDIKKDPGSCTIL 440
           E+AL NYEDIKKDPGSCTIL
Sbjct: 410 EQALGNYEDIKKDPGSCTIL 429