Jatropha Genome Database

JcCA0080571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080571.10 + phase: 0 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29839.m000431 diphosphomevalonate decarboxylase, putative             191   7e-50

>29839.m000431 diphosphomevalonate decarboxylase, putative
          Length = 415

 Score =  191 bits (484), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 98/112 (87%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIAQNRKTA           PPNSDTDLNSYV+GDKSILKDAGI+E+K
Sbjct: 304 VAYTFDAGPNAVLIAQNRKTAVQLLQKLLYYFPPNSDTDLNSYVLGDKSILKDAGIEEMK 363

Query: 61  DVEALPPPPEIKDASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVE+LP PPEIKDA R+KGDVSYFICTRPGRGPVLL+DES ALLNP+TGLPK
Sbjct: 364 DVESLPAPPEIKDAPRFKGDVSYFICTRPGRGPVLLTDESQALLNPQTGLPK 415