Jatropha Genome Database

JcCA0080501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.10 + phase: 0 /partial
         (85 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29595.m000284 conserved hypothetical protein                          163   2e-41

>29595.m000284 conserved hypothetical protein
          Length = 199

 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/83 (90%), Positives = 79/83 (95%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           MIFTCKVCETRS+KT CR+SYEKGVVVARCGGCNNLHLIAD LGWFGEPGSIEDFLAARG
Sbjct: 114 MIFTCKVCETRSVKTICRESYEKGVVVARCGGCNNLHLIADRLGWFGEPGSIEDFLAARG 173

Query: 61  EEVKKGSIDTLNLTLEDLAGSNI 83
           EEV+KGS DTLNLTLEDLAG+ I
Sbjct: 174 EEVRKGSTDTLNLTLEDLAGNKI 196